Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0485.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    34   0.027
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   9.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.5  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.5  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +2

Query: 569 WKDST-SVSPATWCRLGSKTSSTASEHYGNNGCNGGLMDXXLQVPSRDNGGHSNTEQT 739
           +KD T   SPA+  R  S+ S+ +S H G  G  GGL+   L+ PS+ N  +SNT+ +
Sbjct: 503 FKDYTVENSPASRERSTSE-SAQSSVHMGYAG-EGGLLSGALRAPSQQNNNNSNTQHS 558


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 332 CSCPACKKRGPFRTSG 285
           C+CP C+K  P  T G
Sbjct: 144 CTCPLCRKEVPHETVG 159


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 450  MNLAPRTLPPFMYRFLLCLAVLLKPFI 370
            M++AP  L   +  F  CL ++L+P +
Sbjct: 1482 MSVAPLVLSAIIAFFFFCLGIMLRPIL 1508


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +1

Query: 154  SSLTWSRKSGVPSSCSTV-STTKARSKTISA 243
            SSL+ S  SG+ SS ST+ S+T++ S + SA
Sbjct: 983  SSLSSSTTSGLTSSSSTIPSSTRSESNSESA 1013


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,036
Number of Sequences: 5004
Number of extensions: 68126
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)