Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0485.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   4.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 316 QAGHEQVRRHAPPRVREDYERLQQNCQTQQESVHEGWER 432
           Q+ H Q +  A P+ ++  ++ Q   Q QQ+   +  +R
Sbjct: 818 QSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 449 ISPANVKLPEQVDWRK 496
           + P+N KLP   +W+K
Sbjct: 385 LDPSNRKLPAPANWKK 400


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 215 RKRGRRQFPHEDIPEHKHIIAKHNQKYEMGLVSYKLGMNKYGDMLHHE 358
           ++R R +   E   E K II+  +  Y     +YK   N Y   L+++
Sbjct: 297 KERSRDRTERERSKERK-IISSLSNNYNYNNNNYKYNYNNYNKKLYYK 343


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 341 DMLHHEFVKTMNGFNKTAKHNKNLYMKGG 427
           D   H+ +   NG + T  HN+ L   GG
Sbjct: 395 DSARHQRIGGCNGLHTTTAHNRFLGGIGG 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,979
Number of Sequences: 438
Number of extensions: 5042
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)