Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0484.Seq
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   152   6e-38
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   1.3  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   2.3  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    26   5.4  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  152 bits (368), Expect = 6e-38
 Identities = 71/106 (66%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = +3

Query: 222 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 401
           K +   E  L SLPIKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 402 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY-GVTR*ESHT 536
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGY G    + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score =  100 bits (240), Expect = 2e-22
 Identities = 41/70 (58%), Positives = 52/70 (74%)
 Frame = +2

Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
           WG  +G PHTVP KV+GKCGSVT RL+PAPRG G+V+APV K+ LQ+AG++DCYT +   
Sbjct: 143 WGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGS 202

Query: 689 IGNFGKFAKS 718
               G F K+
Sbjct: 203 TKTLGNFVKA 212



 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 20/31 (64%), Positives = 27/31 (87%)
 Frame = +1

Query: 163 KEDQKEWVPVTKLGRLVREGKIDKLESIYLF 255
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLY 58


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 271 NSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 381
           +SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 678 LWFKLATLGNLLKATYAAICQEHMPYLQS*LFEGISPD 791
           LW  + TLGNL +  Y A      PY  S    GI+P+
Sbjct: 336 LWPGIWTLGNLARPGYMATTDGVWPYAYSQCDVGITPN 373


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 201 RPSCSRRKNRQTREHLLVSLPIKEFEIIDFFLGPSLNDE 317
           R    +++NR+T +  LV   +      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,392
Number of Sequences: 5004
Number of extensions: 69542
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)