Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0484.Seq
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 144 9e-35
07_01_0756 + 5819367-5820038,5820847-5821005 140 2e-33
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 69 4e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083... 30 2.4
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 4.3
05_06_0155 - 26028923-26030263 29 4.3
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541... 29 5.6
09_02_0478 - 9749306-9749382,9749543-9749659,9749711-9750398,975... 29 5.6
04_03_0141 + 11767781-11767880,11767953-11769262 28 7.4
02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031 28 9.8
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 144 bits (348), Expect = 9e-35
Identities = 69/90 (76%), Positives = 79/90 (87%)
Frame = +3
Query: 240 EHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 419
E L SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GL
Sbjct: 64 EIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGL 122
Query: 420 GVKCSKEVATAIRGAIILAKLSVLPVRRGY 509
GVKC+KEVATAIRGAIILAKLSV+PVRRGY
Sbjct: 123 GVKCAKEVATAIRGAIILAKLSVVPVRRGY 152
Score = 113 bits (272), Expect = 2e-25
Identities = 50/80 (62%), Positives = 62/80 (77%)
Frame = +2
Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
WGNKIG+PHTVPCKVTGKCGSVT R++PAPRG+GIV+A VPKK+LQ AG++D +TS+
Sbjct: 153 WGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGS 212
Query: 689 IGNFGKFAKSHIRCHLPRTY 748
G F K+ C L +TY
Sbjct: 213 TKTLGNFVKATFDC-LMKTY 231
Score = 48.8 bits (111), Expect = 5e-06
Identities = 18/30 (60%), Positives = 27/30 (90%)
Frame = +1
Query: 163 KEDQKEWVPVTKLGRLVREGKIDKLESIYL 252
++++++WVPVTKLGRLV+EG+ K+E IYL
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYL 67
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 140 bits (338), Expect = 2e-33
Identities = 68/96 (70%), Positives = 80/96 (83%)
Frame = +3
Query: 222 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 401
K + E L SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 402 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY 509
+GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGY
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGY 155
Score = 115 bits (276), Expect = 5e-26
Identities = 51/80 (63%), Positives = 62/80 (77%)
Frame = +2
Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
WGNKIGKPHTVPCKVTGKCGSVT R++PAPRG+GIV+A VPKK+LQ AG++D +TS+
Sbjct: 156 WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGS 215
Query: 689 IGNFGKFAKSHIRCHLPRTY 748
G F K+ C L +TY
Sbjct: 216 TKTLGNFVKATFDC-LMKTY 234
Score = 48.8 bits (111), Expect = 5e-06
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = +1
Query: 163 KEDQKEWVPVTKLGRLVREGKIDKLESIYL 252
++++++WVPVTKLGRLV+E KI K+E IYL
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYL 70
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 68.9 bits (161), Expect = 4e-12
Identities = 34/84 (40%), Positives = 48/84 (57%)
Frame = +2
Query: 527 KPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQIGNFGK 706
KPHTV CKV K GSVT R++ P G+ +V+ VPKK+L+ AG++D +TS+
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSN 106
Query: 707 FAKSHIRCHLPRTYALPSILTF*R 778
F K ++ L Y P + F R
Sbjct: 107 FVKHQMKRALNFQYKPPPLPPFLR 130
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 381 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 476
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +3
Query: 309 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 488
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 489 LPV 497
+ V
Sbjct: 231 VTV 233
>04_03_0229 -
13006869-13007017,13007925-13008089,13008178-13008332,
13010276-13011021
Length = 404
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -2
Query: 115 RHGLYLHRVIRIRRENRHVHRLEQRPXIVERWAL 14
RHGL + RV RR VH L Q P WAL
Sbjct: 73 RHGLAMRRVPFPRRGEDGVHLLSQTPSSPAAWAL 106
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 443 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 327
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>05_06_0155 - 26028923-26030263
Length = 446
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 186 SCHQTRPSCSRRKNRQTREHLLVSLPIKEFEIIDFFLGPSLN 311
SCH P R N RE+L S+P + D F +L+
Sbjct: 52 SCHSNVPELIRAMNAPLREYLRSSVPSARAVVFDMFCACALD 93
>12_02_0387 +
18453328-18453456,18453699-18453836,18454085-18454144,
18461532-18462591,18463022-18463521
Length = 628
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 526 KATHRPLQGHRQVWFRNIPADSCPSW 603
K H L G + W+ N+PA+S SW
Sbjct: 243 KVIHLALDGIARFWYFNLPANSIYSW 268
>09_02_0478 -
9749306-9749382,9749543-9749659,9749711-9750398,
9750521-9751161,9751336-9751462
Length = 549
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 734 NGSVCGF*QISQSCQFEPELTCSNPVH 654
N +C ++ QS F+P++T S P+H
Sbjct: 112 NVPICDLLEVKQSVAFQPDITGSFPIH 138
>04_03_0141 + 11767781-11767880,11767953-11769262
Length = 469
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 193 TKLGRLVREGKIDKLESIYLFLYQSKNSRSLISSSARP 306
T++G L + ++ LES F+Y + S SSSARP
Sbjct: 428 TRVGTL--DSRVQMLESSQAFVYHGRRDASHPSSSARP 463
>02_02_0591 - 11901947-11901984,11902394-11903786,11903846-11904031
Length = 538
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 658 YTSHLKKLLRNWRRHNTSTTRGRNQPECYGTTLAGDLA 545
Y ++++L+++W H+ R + P+ G + DLA
Sbjct: 410 YPINVERLIQHWMAHDFIPAREEDNPDMVGKEIFNDLA 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,231,028
Number of Sequences: 37544
Number of extensions: 507507
Number of successful extensions: 1372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -