Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0484.Seq
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              169   2e-42
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.47 
SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)             30   2.5  
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)                  29   3.3  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   4.3  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   4.3  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   4.3  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   4.3  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 28   7.6  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.6  
SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)                     28   7.6  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  169 bits (412), Expect = 2e-42
 Identities = 83/94 (88%), Positives = 89/94 (94%), Gaps = 1/94 (1%)
 Frame = +3

Query: 231 QTREHL-LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 407
           +T EH+ L SLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 408 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY 509
           H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGY
Sbjct: 84  HVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY 117



 Score =  128 bits (310), Expect = 4e-30
 Identities = 59/81 (72%), Positives = 63/81 (77%)
 Frame = +2

Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
           WGNKIGKPHTVPCKVTGKCGS   RLIPAPRGTGIVSAPVPKKLLQMAG++DCYTS   Q
Sbjct: 118 WGNKIGKPHTVPCKVTGKCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAGIEDCYTSTRGQ 177

Query: 689 IGNFGKFAKSHIRCHLPRTYA 751
               G FAK+     +  TYA
Sbjct: 178 TATLGNFAKATFAA-ISETYA 197



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = +1

Query: 181 WVPVTKLGRLVREGKIDKLESIYLF 255
           WVPVTKLGRLV++ KI  LE IYLF
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLF 32


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 482 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 303
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292

Query: 302 RAEEEI 285
           R ++E+
Sbjct: 293 RNQDEL 298


>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 657

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -1

Query: 482 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLIIQG 303
           ++ + NS  N   D        TNMT + + G  CL     + TC+ L   DL NL+ + 
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576

Query: 302 RAEEEI 285
           R ++E+
Sbjct: 577 RNQDEL 582


>SB_22198| Best HMM Match : Borrelia_orfA (HMM E-Value=5.4)
          Length = 394

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -2

Query: 664 ILYTSHLKKLLRNWRRHNTSTTRGRNQPECYGTTLAGDLARDGVWLSYLV 515
           +LYT +  +  RN++ +NT  T  R Q E   TT+   L  D   LS LV
Sbjct: 36  LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 84



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -2

Query: 664 ILYTSHLKKLLRNWRRHNTSTTRGRNQPECYGTTLAGDLARDGVWLSYLV 515
           +LYT +  +  RN++ +NT  T  R Q E   TT+   L  D   LS LV
Sbjct: 285 LLYTRNSTRTARNYQYYNTRQTLCR-QRETINTTIHAKLYTDSEKLSILV 333



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -2

Query: 661 LYTSHLKKLLRNWRRHNTSTTRGRNQPECYGTTLAGDLARDGVWLSYLV 515
           LYT +  +  RN++ +NT  T  R Q E   TT+   L  D   LS LV
Sbjct: 145 LYTRNSTRTARNYQYYNTRETLCR-QRETINTTIHAKLYTDSEKLSILV 192



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 664 ILYTSHLKKLLRNWRRHNTSTTRGRNQPECYGTTLAGDLARDGVWLSYLV-TP*PLRTGR 488
           ++YT +  +  RN++ +NT  T  R Q E   TT+   L  D   LS L+ T    RT R
Sbjct: 191 LVYTRNSTQTARNYQYYNTRKTL-RRQRETINTTIHAKLYTDSEKLSILLYTRNSTRTAR 249



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 664 ILYTSHLKKLLRNWRRHNTSTTRGRNQPECYGTTLAGDLARDGVWLSYLV-TP*PLRTGR 488
           +LYT +  +  RN++ +NT  T    Q E   TT+   L  D   LS L+ T    RT R
Sbjct: 238 LLYTRNSTRTARNYQYYNTRETL-HGQRETINTTIHAKLYTDSEKLSILLYTRNSTRTAR 296


>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
          Length = 280

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/44 (43%), Positives = 23/44 (52%)
 Frame = -1

Query: 455 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 324
           N  G  LA  +   N+  +V NG K  + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 309 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 422
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 309 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 422
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 309  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 422
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 309 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 422
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 309 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 422
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 309 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 422
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 359 TAHTFQGICCHWRQQRSYW 415
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 357 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 446
           G++ + K F+A+G  NGH+     C  ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385


>SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)
          Length = 629

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 339 QKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYGVT 518
           +KQT   Q+ R KA   +G +    G+GV+ +K     +     + +L V  ++    V 
Sbjct: 56  EKQTEKIQQERHKALEDMGISIQSSGIGVEKNKFYLVNLNADPAMNELLVYYLKEHSKVG 115

Query: 519 R*E-SHTPSLARSPASVVP*H 578
           R + +HTP +      ++P H
Sbjct: 116 RLDANHTPDIQLGGLGILPEH 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,622,960
Number of Sequences: 59808
Number of extensions: 580582
Number of successful extensions: 1551
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)