Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0484.Seq
(794 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 140 8e-34
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 31 0.95
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 31 0.95
Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical pr... 29 3.8
U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical p... 29 3.8
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 8.9
AF016440-6|AAN84798.1| 525|Caenorhabditis elegans Hypothetical ... 28 8.9
AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical ... 28 8.9
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 28 8.9
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 8.9
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 8.9
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 140 bits (340), Expect = 8e-34
Identities = 73/97 (75%), Positives = 80/97 (82%)
Frame = +3
Query: 219 RKNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 398
+K E L SLPIKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD
Sbjct: 70 KKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGD 128
Query: 399 NNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY 509
+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGY
Sbjct: 129 HAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGY 165
Score = 122 bits (295), Expect = 2e-28
Identities = 57/81 (70%), Positives = 62/81 (76%)
Frame = +2
Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
WGNKIG PHTVPCKVTGKC SV RLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A
Sbjct: 166 WGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGS 225
Query: 689 IGNFGKFAKSHIRCHLPRTYA 751
G FAK+ L RTY+
Sbjct: 226 TATLGNFAKATYAA-LQRTYS 245
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +1
Query: 166 EDQKEWVPVTKLGRLVREGKIDKLESIYL 252
E + EW PVTKLGRLV+E KI LE IYL
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYL 80
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 31.1 bits (67), Expect = 0.95
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 536 TVP-CKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQIGNFGKFA 712
T+P C+ G TFRLIP G +K+ + C+ + G+
Sbjct: 482 TIPDCERVGLMRRTTFRLIPKDNNDGNEDI---RKIFSRIFISRCFVDVIFNFAK-GRLD 537
Query: 713 KSHIRCHLPRTYALPSILTF 772
+H+R T+ LP + TF
Sbjct: 538 ATHLRSR-ALTFFLPDVTTF 556
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 31.1 bits (67), Expect = 0.95
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +2
Query: 536 TVP-CKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQIGNFGKFA 712
T+P C+ G TFRLIP G +K+ + C+ + G+
Sbjct: 482 TIPDCERVGLMRRTTFRLIPKDNNDGNEDI---RKIFSRIFISRCFVDVIFNFAK-GRLD 537
Query: 713 KSHIRCHLPRTYALPSILTF 772
+H+R T+ LP + TF
Sbjct: 538 ATHLRSR-ALTFFLPDVTTF 556
>Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical
protein M05D6.7 protein.
Length = 409
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 196 KLGRLVREGKIDKLESIYLFLYQSKNSRSL 285
K+G ++REGK++K S +Y+ NS+SL
Sbjct: 107 KIGNIIREGKVEKNVSNDNKIYELWNSKSL 136
>U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical
protein F55F8.9 protein.
Length = 477
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 652 SHLKKLLRNWRRHNTSTTRGRNQPECYGTTLAGDL 548
+H K + +N RR+ +R +N+ YG+TL GDL
Sbjct: 218 THKKIVFKN-RRYGRRISRNQNRFSSYGSTLNGDL 251
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 386 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 300
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 386 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 300
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 612 IPVPRGAGISRNVTEPHLPVTLQGTV 535
IP P+G S N T P + VTL G +
Sbjct: 1340 IPAPKGVASSSNNTSPRVNVTLGGAL 1365
>AF016440-6|AAN84798.1| 525|Caenorhabditis elegans Hypothetical
protein F29G9.2b protein.
Length = 525
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 413 WFGCEVQQGSRHCHSRRYYPC*AVSSTSPKRLWGN 517
W G EV S CH P SSTS ++GN
Sbjct: 357 WLGEEVMSNSEDCH-LELKPVMTTSSTSSSHIFGN 390
>AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical
protein F29G9.2a protein.
Length = 535
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 413 WFGCEVQQGSRHCHSRRYYPC*AVSSTSPKRLWGN 517
W G EV S CH P SSTS ++GN
Sbjct: 367 WLGEEVMSNSEDCH-LELKPVMTTSSTSSSHIFGN 400
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 612 IPVPRGAGISRNVTEPHLPVTLQGTV 535
IP P+G S N T P + VTL G +
Sbjct: 358 IPAPKGVASSSNNTSPRVNVTLGGAL 383
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 612 IPVPRGAGISRNVTEPHLPVTLQGTV 535
IP P+G S N T P + VTL G +
Sbjct: 1338 IPAPKGVASSSNNTSPRVNVTLGGAL 1363
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 612 IPVPRGAGISRNVTEPHLPVTLQGTV 535
IP P+G S N T P + VTL G +
Sbjct: 1338 IPAPKGVASSSNNTSPRVNVTLGGAL 1363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,935
Number of Sequences: 27780
Number of extensions: 410806
Number of successful extensions: 1130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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