Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0484.Seq
(794 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 158 3e-39
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 157 8e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 156 2e-38
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 156 2e-38
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 156 2e-38
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 156 2e-38
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At1g53180.1 68414.m06027 expressed protein 30 1.5
At5g06620.1 68418.m00748 expressed protein 29 2.7
At4g17120.1 68417.m02578 expressed protein 29 4.7
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.2
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 28 6.2
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 6.2
At4g03740.1 68417.m00513 hypothetical protein 28 6.2
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 6.2
At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low sim... 28 8.2
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 158 bits (384), Expect = 3e-39
Identities = 73/94 (77%), Positives = 84/94 (89%)
Frame = +3
Query: 228 RQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 407
+Q + L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 408 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY 509
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGY
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGY 163
Score = 114 bits (275), Expect = 6e-26
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = +2
Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
WGNKIGKPHTVPCKVTGKCGSVT R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+
Sbjct: 164 WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGS 223
Query: 689 IGNFGKFAKSHIRCHLPRTY 748
G F K+ C L +TY
Sbjct: 224 TKTLGNFVKATFDC-LQKTY 242
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYL 252
++++WVPVTKLGRLV G I ++E IYL
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYL 77
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 157 bits (381), Expect = 8e-39
Identities = 71/87 (81%), Positives = 82/87 (94%)
Frame = +3
Query: 249 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 428
L SLP+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVK
Sbjct: 68 LHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVK 127
Query: 429 CSKEVATAIRGAIILAKLSVLPVRRGY 509
CSKEVATAIRGAIILAKLSV+P+RRGY
Sbjct: 128 CSKEVATAIRGAIILAKLSVVPIRRGY 154
Score = 114 bits (275), Expect = 6e-26
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = +2
Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
WGNKIGKPHTVPCKVTGKCGSVT R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+
Sbjct: 155 WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGS 214
Query: 689 IGNFGKFAKSHIRCHLPRTY 748
G F K+ C L +TY
Sbjct: 215 TKTLGNFVKATFDC-LQKTY 233
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYL 252
++++WVPVTKLGRLV+EGKI K+E IYL
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYL 68
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 156 bits (378), Expect = 2e-38
Identities = 72/87 (82%), Positives = 81/87 (93%)
Frame = +3
Query: 249 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 428
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 429 CSKEVATAIRGAIILAKLSVLPVRRGY 509
CSKEVATAIRGAIILAKLSV+PVRRGY
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRGY 162
Score = 114 bits (275), Expect = 6e-26
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = +2
Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
WGNKIGKPHTVPCKVTGKCGSVT R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+
Sbjct: 163 WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGS 222
Query: 689 IGNFGKFAKSHIRCHLPRTY 748
G F K+ C L +TY
Sbjct: 223 TKTLGNFVKATFDC-LQKTY 241
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYL 252
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 156 bits (378), Expect = 2e-38
Identities = 72/87 (82%), Positives = 81/87 (93%)
Frame = +3
Query: 249 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 428
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 429 CSKEVATAIRGAIILAKLSVLPVRRGY 509
CSKEVATAIRGAIILAKLSV+PVRRGY
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRGY 162
Score = 114 bits (275), Expect = 6e-26
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = +2
Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
WGNKIGKPHTVPCKVTGKCGSVT R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+
Sbjct: 163 WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGS 222
Query: 689 IGNFGKFAKSHIRCHLPRTY 748
G F K+ C L +TY
Sbjct: 223 TKTLGNFVKATFDC-LQKTY 241
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYL 252
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 156 bits (378), Expect = 2e-38
Identities = 72/87 (82%), Positives = 81/87 (93%)
Frame = +3
Query: 249 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 428
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 429 CSKEVATAIRGAIILAKLSVLPVRRGY 509
CSKEVATAIRGAIILAKLSV+PVRRGY
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRGY 162
Score = 114 bits (275), Expect = 6e-26
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = +2
Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
WGNKIGKPHTVPCKVTGKCGSVT R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+
Sbjct: 163 WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGS 222
Query: 689 IGNFGKFAKSHIRCHLPRTY 748
G F K+ C L +TY
Sbjct: 223 TKTLGNFVKATFDC-LQKTY 241
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYL 252
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 156 bits (378), Expect = 2e-38
Identities = 72/87 (82%), Positives = 81/87 (93%)
Frame = +3
Query: 249 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 428
L SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVK
Sbjct: 76 LHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVK 135
Query: 429 CSKEVATAIRGAIILAKLSVLPVRRGY 509
CSKEVATAIRGAIILAKLSV+PVRRGY
Sbjct: 136 CSKEVATAIRGAIILAKLSVVPVRRGY 162
Score = 114 bits (275), Expect = 6e-26
Identities = 51/80 (63%), Positives = 61/80 (76%)
Frame = +2
Query: 509 WGNKIGKPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSALVQ 688
WGNKIGKPHTVPCKVTGKCGSVT R++PAPRG+GIV+A VPKK+LQ AG+ D +TS+
Sbjct: 163 WGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGS 222
Query: 689 IGNFGKFAKSHIRCHLPRTY 748
G F K+ C L +TY
Sbjct: 223 TKTLGNFVKATFDC-LQKTY 241
Score = 44.8 bits (101), Expect = 7e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +1
Query: 169 DQKEWVPVTKLGRLVREGKIDKLESIYL 252
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +3
Query: 312 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 491
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 492 PV 497
V
Sbjct: 209 QV 210
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 527 KPHTVPCKVTGKCGSVTFRLIPAPRGTGIVSAPVPKKLLQMAGVQD 664
K T P + G G+ L PA GTG+++ + +L+MAGV++
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVEN 259
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +2
Query: 410 YWFGCEV----QQGSRHCHSRRYYPC*AVSSTSPKRLWGNKIGK 529
YWF + +G R+CHS Y P + +STSP+++ + IGK
Sbjct: 18 YWFFENLFTRRSRGLRYCHSDPY-PSSSSTSTSPEKMGDSDIGK 60
>At5g06620.1 68418.m00748 expressed protein
Length = 258
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 544 RDGVWLSYLVTP*PLRTGRTDSLAR-IIAPRMAVATSLLHFTPKPI 410
RDG Y + P P+R G T+S R + A R A L+H T KP+
Sbjct: 33 RDG---DYQIGPPPIRVGLTESAGRAVFATRKIGAGDLIH-TAKPV 74
>At4g17120.1 68417.m02578 expressed protein
Length = 1661
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 589 SCPSWYWYCVCASS*EASSDGWCTGLLHVSSGSNWQLWEIC*KPHTLPFAKNI 747
SC S C+ A + E+ +CT + SSG N +LW C K AK+I
Sbjct: 837 SCESEPEICISALT-ESEHLLFCTQINSTSSGDNQKLW-FCLKTQATEIAKDI 887
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 378 AFVAIGDNNGHIGLGVKCSKE 440
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 358 PARVCFCTGMILRTSSFRDGPRKKSMISNSLIGKETSK 245
P R FC+G+ +S + PR+KS +S+ L K+ K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 561 LPVTLQGTVCGFPILLPHNLF 499
LP+ LQG + GF + LP N++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At4g03740.1 68417.m00513 hypothetical protein
Length = 345
Score = 28.3 bits (60), Expect = 6.2
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1
Query: 547 QGHRQVWFRNIPADSCPSWYWYC 615
+ ++++WFR SCP W C
Sbjct: 60 RNNQEIWFRTFALGSCPHTLWPC 82
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -2
Query: 463 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMILRTSSFR 305
A A+ H +P + P L P N R+R A CF +G + R + R
Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235
>At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low
similarity to breast cancer susceptibility protein
[Gallus gallus] GI:19568157; contains Pfam profile
PF00634: BRCA2 repeat
Length = 1155
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 621 RQFLRSFFRWLVYRIATRQLWFKLATLGNLLKAT 722
R+++ + +RW+V+++A +++ GN L T
Sbjct: 575 RKWVTNHYRWIVWKLACYDIYYPAKCRGNFLTIT 608
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,576,722
Number of Sequences: 28952
Number of extensions: 391299
Number of successful extensions: 1058
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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