Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0483.Seq
         (696 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   3.2  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.3  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.6  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 115 KVLIRIIIMWVKPQEIYLKTALWDTEET 198
           + LI + + +   QE+ L T LW+ + T
Sbjct: 267 RFLIMLALSYTVIQEVMLFTILWNCQNT 294


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 564 RFNXPKAEKLVCYYSCSYWKGKNATSRGWMYP 659
           +F    ++K++CYY+   W G N    G   P
Sbjct: 14  QFTSAASDKIICYYAS--W-GANRPGNGKFTP 42


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 194 KHLCILFYNVEKDMVXQKGSLASCW-YFRQRPRHQ 295
           K L    Y V ++     GSL +CW  F Q+ + Q
Sbjct: 210 KLLTSKIYKVLEEKYKTSGSLYTCWSEFTQKTQGQ 244


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 603 YSCSYWKGKN 632
           +SC Y++GKN
Sbjct: 231 FSCQYYQGKN 240


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 603 YSCSYWKGKN 632
           +SC Y++GKN
Sbjct: 251 FSCQYYQGKN 260


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 415 VQHSIPLTPXKKSQNL 462
           V HS P+T   K Q+L
Sbjct: 235 VNHSAPITTCNKKQHL 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,223
Number of Sequences: 336
Number of extensions: 3664
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)