Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0483.Seq
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0898 - 7524763-7524915,7531574-7532707                           29   4.7  
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89...    28   8.1  
02_02_0669 + 12779583-12779675,12779942-12780124,12780266-127804...    28   8.1  

>07_01_0898 - 7524763-7524915,7531574-7532707
          Length = 428

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 675 W*WDRPDTSIPWTWHFSPS 619
           W W  PD S P +W + PS
Sbjct: 253 WSWRHPDASTPISWSYDPS 271


>04_01_0082 +
           897026-897028,897101-897350,898454-898608,898686-898967,
           899078-899160,899335-899485,899896-899952,900279-900479
          Length = 393

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 695 MHGMKPHGNGTDRIHPSP 642
           +HG  P GNG+D+ H +P
Sbjct: 319 LHGQAPVGNGSDKAHGTP 336


>02_02_0669 +
           12779583-12779675,12779942-12780124,12780266-12780481,
           12780590-12780952,12781453-12781612,12781724-12781827
          Length = 372

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 345 YVIATALTEQQIRQDWQWLIDNVCSTLHSFDTXEEVTEFVC 467
           Y IA  +  +   ++W W ID +C  L    T +  ++++C
Sbjct: 306 YPIAWVVAAKDNNEEWDWFIDLLCGDL-QVGTGQGNSQYLC 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,236
Number of Sequences: 37544
Number of extensions: 344457
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)