Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0483.Seq
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   6e-07
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    30   2.1  
SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.3  
SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.3  
SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)                       28   6.3  

>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 22/43 (51%), Positives = 30/43 (69%)
 Frame = +1

Query: 139 MWVKPQEIYLKTALWDTEETSLYFVLQCRKGHGXSKGLSRFLL 267
           MWV+P+++ L  ALW TE  + YFV+Q RKGHG   GL+  L+
Sbjct: 1   MWVRPEDVLLANALWATERANPYFVMQRRKGHGGG-GLTSLLI 42



 Score = 31.9 bits (69), Expect = 0.51
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 603 YSCSYWKGKNATSRGWMY 656
           YSCSYWKG+    +GW+Y
Sbjct: 119 YSCSYWKGR-VPRQGWLY 135



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 13/44 (29%)
 Frame = +3

Query: 255 SLLVGTLDSVRDTK-------------PAPYRILHQTPXSXIYY 347
           SLL+GTLD+V D+K             PAP+RIL Q   S + Y
Sbjct: 39  SLLIGTLDNVLDSKLVLEYKLLCSEFQPAPFRILLQLANSDVSY 82


>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 179 YGIRKKHLCILFYNVEKDMVXQKGSLASCWYFRQRPRHQTCALQD 313
           Y      LC   YN+E++++ +K   AS        RHQ  +L+D
Sbjct: 73  YATENSSLCTKVYNLERELLDEKSINASTILENANLRHQVGSLED 117


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 351 IATALTEQQIRQDWQWLIDNVCSTLHSFDTXEEVTE 458
           I  A TE+Q RQ+W ++I++V   L+  D   E  E
Sbjct: 851 ITVATTEEQSRQEWIYVINHVIRNLNDGDLSLECLE 886


>SB_35963| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 864

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 626 EKCHVQGMDVSGLSHYHVVS 685
           EKCH +  D SG+  Y +VS
Sbjct: 159 EKCHAEDKDRSGIDRYEIVS 178


>SB_34907| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 697

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 626 EKCHVQGMDVSGLSHYHVVS 685
           EKCH +  D SG+  Y +VS
Sbjct: 155 EKCHAEDKDRSGIDRYEIVS 174


>SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)
          Length = 410

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +3

Query: 369 EQQIRQDWQWLIDNVCSTLH---SFDTX-EEVTEFVCCXINSVMGN*XRXXTEDXDTITY 536
           +Q   +D Q   +N    LH   SF    EEV E  C   +  MG      T+D DT +Y
Sbjct: 339 DQTFLRDAQEHCENAAKLLHIGASFGLRTEEVVEHTCSITSLQMGETMPSVTKDMDTYSY 398

Query: 537 K 539
           +
Sbjct: 399 R 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,981,754
Number of Sequences: 59808
Number of extensions: 411368
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)