Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0483.Seq
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.6  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 221 VEKDMVXQKGSLASCW 268
           +E D   +KGS+A CW
Sbjct: 201 IETDSDRRKGSIARCW 216


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 576 PKAEKLVCYYSC 611
           P+ EKL CY++C
Sbjct: 63  PEDEKLKCYFNC 74


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 280 LSKVPTRSERALLXYHVLFYIV 215
           LSK PTRS+R  +   + F IV
Sbjct: 405 LSKFPTRSKRIDVISRIFFPIV 426


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 280 LSKVPTRSERALLXYHVLFYIV 215
           LSK PTRS+R  +   + F IV
Sbjct: 405 LSKFPTRSKRIDVISRIFFPIV 426


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,410
Number of Sequences: 438
Number of extensions: 4124
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)