Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0483.Seq
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40160.1 68415.m04939 expressed protein                             28   5.1  
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ...    28   6.8  
At1g12170.1 68414.m01409 F-box family protein contains F-box dom...    28   6.8  
At5g35980.1 68418.m04333 protein kinase family protein contains ...    27   9.0  
At1g15890.1 68414.m01906 disease resistance protein (CC-NBS-LRR ...    27   9.0  

>At2g40160.1 68415.m04939 expressed protein
          Length = 427

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 393 QWLIDNVCSTLHSFDTXEEVTEFVCCXIN 479
           +W++DNV   L+  D  E ++E+V C  N
Sbjct: 83  KWVLDNVTHPLYKEDECEFLSEWVACTRN 111


>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 469

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 171 NRTMGYGRNIFVFCFTM*KRTWXIKRALSLLVGT-LDSVRD-TKPAPYRIL--HQTPXS 335
           N   G  RNIF+F F     TW +   LSL   T   SV D + P+  R+L  H+T  S
Sbjct: 28  NNRGGNKRNIFIFFFFRNYYTWILWFCLSLYFFTSYFSVEDQSSPSSIRLLSNHKTSSS 86


>At1g12170.1 68414.m01409 F-box family protein contains F-box
          domain Pfam:PF00646
          Length = 364

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 8  PNSLTSYKLCCKNWRK*HLFKRKTIRN 88
          P SLT +K+ CK W    LFK K+  N
Sbjct: 20 PLSLTRFKIVCKQWNT--LFKSKSFVN 44


>At5g35980.1 68418.m04333 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 956

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 680 PHGNGTDRIHPSPGRGIF-PLPI 615
           PHGNG + +  SP  G F PLP+
Sbjct: 598 PHGNGPNGLGTSPSAGNFAPLPL 620


>At1g15890.1 68414.m01906 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 851

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 348 VIATALTEQQIRQDWQWLIDNVCSTLHSFDTXEE 449
           VI  A+  ++  Q+WQ +I  + S+ H F + EE
Sbjct: 354 VIGKAMASRETVQEWQHVIHVLNSSSHEFPSMEE 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,471
Number of Sequences: 28952
Number of extensions: 290495
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)