Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0482.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    27   3.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   9.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.5  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = -1

Query: 566 ATLPLVLDVGDGAVLPPVHRSGSFTLAGDMNLAPRT----LPPFMYRFLLCLAVLLKPFI 399
           +TLP   D+   A L P   S   T   + N+  R     L P +Y  L  L  +L   +
Sbjct: 40  STLPPYSDISKLANLVPEDSSTGPTETANPNVERRQEFKDLHPNIYSLLRLLIAVLAVSV 99

Query: 398 VFTNSWWSMSP 366
           VF  +W  ++P
Sbjct: 100 VFFTAWGCVNP 110


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 361 CSCPACKKRGPFRTSG 314
           C+CP C+K  P  T G
Sbjct: 144 CTCPLCRKEVPHETVG 159


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 479  MNLAPRTLPPFMYRFLLCLAVLLKPFI 399
            M++AP  L   +  F  CL ++L+P +
Sbjct: 1482 MSVAPLVLSAIIAFFFFCLGIMLRPIL 1508


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 650 LLRERHQVAGLTEVLSFPKLQSC 582
           LL+E H+V G T V SF   Q C
Sbjct: 781 LLKEHHKVIGETYVSSFDIQQGC 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,454
Number of Sequences: 5004
Number of extensions: 63936
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)