Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0482.Seq
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 332 PISYFWLCLAMMCLCSAYIFM 270
           P+SY     A M +C+ ++FM
Sbjct: 300 PVSYLKAVDAFMSVCTVFVFM 320


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 345 QAGHEQVRRHAPPRVREDYERLQQNCQTQQESVHEGWER 461
           Q+ H Q +  A P+ ++  ++ Q   Q QQ+   +  +R
Sbjct: 818 QSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQR 856



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 402  ERLQQNCQTQQESVHEGWERPRG*VHIAGQREAAGA 509
            ++ QQ  Q QQ+   +  ++ +   H A +RE  GA
Sbjct: 1209 QQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGA 1244



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 668  GAYGNNGCNGGLMDN 712
            G Y  +G NG  +DN
Sbjct: 1272 GIYDGSGANGSFLDN 1286


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 499 LPERWTGGSTAPSP 540
           LPERWT  +T  SP
Sbjct: 440 LPERWTTPTTPHSP 453


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 219 SSCSTVSTTKARRRQFPHEDIR*AQAHHRQTQ 314
           SS ST    +     +P+     A  HH+Q Q
Sbjct: 74  SSASTSPAARTTSSMYPYVSAAAAHHHHQQQQ 105


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 370 DMLHHEFVKTMNGFNKTAKHNKNLYMKGG 456
           D   H+ +   NG + T  HN+ L   GG
Sbjct: 395 DSARHQRIGGCNGLHTTTAHNRFLGGIGG 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,578
Number of Sequences: 438
Number of extensions: 4640
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)