Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0480.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    28   0.90 
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    27   2.7  
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    27   2.7  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   4.8  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   4.8  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   4.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.3  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   8.4  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 436  RFLFRISSKSLLLLNGLTPPAISFLTSVED 347
            R LFRIS   LLLL  +   ++S ++S +D
Sbjct: 1544 RLLFRISVYDLLLLQSIAQASVSVISSYKD 1573


>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 384 VRPFRSNNDLLEILKRKRAQAAEAKSRGSTVQ 479
           V+  +   D L+ +K   A+  EAK++G TVQ
Sbjct: 96  VKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQ 127


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 384 VRPFRSNNDLLEILKRKRAQAAEAKSRGSTVQ 479
           V+  +   D L+ +K   A+  EAK++G TVQ
Sbjct: 96  VKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQ 127


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -2

Query: 150 VRKLSKQIGVGSSCLSVARPLMLQACVITNFPFSALWFCAGPPRTETSLA 1
           +RKLS      S+ +S+   ++++  V    P   +W   G P +E S++
Sbjct: 311 IRKLSWSSSTKSNYVSLLIAMVVRELVFAILPRGCIWGFNGKPLSEVSVS 360


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 458 ISRFNSTEPGAAFPVLVR 511
           +SRF+S EP A  P+L R
Sbjct: 421 VSRFDSNEPSATSPILKR 438


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 153 GQRVHKKRGRLVRHNGAS*NEACSPKGND--HNNHNSAPREYADYEDEGDYPADG 311
           GQR  + R  L      S +   S   N   HNN +S    ++  EDEG+   +G
Sbjct: 367 GQRYDELRRELADIQNESLDSLNSSSNNSPSHNNIHSRQHPFSSDEDEGNIVTNG 421


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 75  CVITNFPFSALWFCAGPPRTETSLA 1
           C+ +NF  S   FC  P    TSL+
Sbjct: 54  CLFSNFSHSCFLFCTHPDTLPTSLS 78


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 153 HVRKLSKQIGVGSSCLSV 100
           HVRK S  I V S C+S+
Sbjct: 580 HVRKTSFDISVASECMSI 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,407
Number of Sequences: 5004
Number of extensions: 39785
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)