Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0480.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540...    29   3.7  
06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652     28   6.5  
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202...    28   6.5  
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395...    27   8.6  

>06_02_0072 +
           11152988-11153102,11153581-11153705,11153860-11154004,
           11154219-11154284,11154418-11154540,11154839-11154961,
           11156065-11156193,11156510-11156632,11156737-11156838,
           11156943-11157065,11157169-11157270,11157370-11157492,
           11157791-11157913,11158209-11158331,11158633-11158761,
           11160210-11161039
          Length = 867

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 150 VRKLSKQIGVGSSCLSVARPLMLQACVITNFPFSALWFC 34
           VR+LS   G GSS  S   P  + AC    +P+ A+++C
Sbjct: 741 VRELSAMAGSGSSSSSEPAPAAVVACHDLTYPY-AVFYC 778


>06_03_0214 + 18067945-18068463,18068940-18069839,18069918-18070652
          Length = 717

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 174 RGRLVR-HNGAS*NEACSPKGNDHNNHNSAP 263
           +G +V     A+  E   P+G++HNNH S P
Sbjct: 171 QGEMVTTRRSAATGEGSHPEGSNHNNHGSPP 201


>02_05_0140 -
           26218828-26219759,26219885-26220002,26220089-26220278,
           26220380-26220514,26220617-26220714,26221697-26221866,
           26222586-26222961
          Length = 672

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 587 PGTILPPGNGWCVGTFLTTVIQF-GSVALAPERQPRVL 477
           PG+   PG GW VG  L   I F G+++L P R+  V+
Sbjct: 151 PGSYKEPGIGWMVGLLL--AISFAGNLSLIPLRKALVV 186


>07_03_0539 -
           19237573-19239169,19239258-19239410,19239505-19239566,
           19239855-19240103,19240248-19240337,19240453-19240632,
           19240713-19240942,19241558-19241735,19242327-19242432,
           19242786-19242883,19243683-19243813,19243908-19244087,
           19244179-19244443,19244557-19244627,19244707-19244922,
           19245147-19245294
          Length = 1317

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +3

Query: 174 RGRLVRHNGAS*NEACSPKGNDHNNHN-SAPREYADYEDEGDYPADG 311
           RG    H   S  +      +   +H+ S PR Y DYED G     G
Sbjct: 131 RGPSPSHRDGSYRQDTHKSRSSQGSHSRSTPRRYDDYEDRGSRDKHG 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,446
Number of Sequences: 37544
Number of extensions: 318522
Number of successful extensions: 831
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)