Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0480.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   1.6  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_4637| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)           27   8.7  

>SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 670

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 180 RLVRHNGAS*NEACSPKGNDHNNHNSAPREYADYEDEGD 296
           RL+R +  S N+  + K ND+NN+N+   +  D +D+ D
Sbjct: 583 RLLRSDQESINKRMTDKNNDNNNNNNNNDDDDDDDDDDD 621


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 558 LVRRHVSYHCNSIWQRRTSTGKAAPGSVLLNREIWLQQLVPAFSL 424
           +++R VS +  +++     TG+  P  VLL  +IW Q   P F +
Sbjct: 201 MLKRKVSIYSFNVFNNTPKTGQNCPEEVLLKTKIW-QSRFPGFGV 244


>SB_4637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 28  TCTEPQRGERKVRNYAGLQHQRPSNTQ 108
           T    +RG RKV+N+ GL  + PS  +
Sbjct: 145 TLINRRRGSRKVKNFMGLLEEEPSEVR 171


>SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 123 VGSSCLSVARPLMLQACVITNFPFSALWFCAGPPRTET 10
           V +S  SV   +++  C++  +P SA  + AG P+  T
Sbjct: 142 VDASTASVYLKILVDRCMVPLYPESATEYLAGDPKVNT 179


>SB_45935| Best HMM Match : Aldolase_II (HMM E-Value=1.1e-27)
          Length = 468

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 213 EACSPKGNDHNNHNSAPREYADYEDEGD 296
           EA  P G++  +H+    + AD+ DE D
Sbjct: 388 EALKPPGDEDEDHDGEKSDEADHRDEAD 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,316,970
Number of Sequences: 59808
Number of extensions: 345294
Number of successful extensions: 1028
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)