Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0479.Seq
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 31 0.21
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 29 0.84
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 28 1.1
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 1.9
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 27 2.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 2.6
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 4.5
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 26 5.9
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 7.9
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 7.9
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 408 LLEILKKKRAQAAEAKSRGSTVTEPAAPSDAGGELPNRITVVRNVPT 548
L EI + K+ +AAE +++ S+V E AAP + T R PT
Sbjct: 119 LAEIERDKKRRAAERENKNSSVKETAAPIKQPKNANSSSTCTRTPPT 165
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 28.7 bits (61), Expect = 0.84
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 513 PNRITVVRNVPTHQPLPAKILLPPHRNLPEGRFNRPSSRAVEPESRRTRTSPFKPA 680
P+R + R + P K+ + P P N PS ++ ES TR+SP KP+
Sbjct: 541 PSRPRLPRVASPLKTSPVKLAVTPQAPSPLPSSN-PSQASLTEESLSTRSSPTKPS 595
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/64 (25%), Positives = 25/64 (39%)
Frame = +3
Query: 486 APSDAGGELPNRITVVRNVPTHQPLPAKILLPPHRNLPEGRFNRPSSRAVEPESRRTRTS 665
AP P + + R P P+K + H ++PE +F P + A +
Sbjct: 441 APKSQFSSSPTKESTTRKSEVEPPSPSKEIKSSHFSVPEFKF-EPKTEATTDKKLNVPKF 499
Query: 666 PFKP 677
FKP
Sbjct: 500 EFKP 503
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 456 SRGSTVTEPAAPSDAG---GELPNRITVVRNVPTHQPLPAKILLPPHRNLPEGRFNRPSS 626
SR + V P+ P + G++ N T+ + P+ AK +PP + + P+S
Sbjct: 213 SRSAVVPNPSLPLNPSVLQGQVMNNPTIPKGTPSTSIEGAKTSIPPSHAMQNPHNSFPAS 272
Query: 627 RAVEPESRRTRTSPFKP 677
++ ++S F P
Sbjct: 273 ADRLQKNHPVQSSNFNP 289
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 601 REDSTGHHQEPWNLKAEEPERVRSNQHGSKK 693
R+ HQ L EE ER+ +HGSKK
Sbjct: 485 RDPKKFQHQGFGTLLLEEAERIAKYEHGSKK 515
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 433 RFFFRISSKSLLLLNGLTPPSISFLPSVED 344
R FRIS LLLL + S+S + S +D
Sbjct: 1544 RLLFRISVYDLLLLQSIAQASVSVISSYKD 1573
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 507 ELPNRITVVRNVPTHQPLPAKILLPPHRNLPEGRFNRPS 623
E+ NR+ V++ PT KI++P H+ L N PS
Sbjct: 368 EIRNRLYSVKS-PTQMAAREKIIIPIHQKLKAWEENLPS 405
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 639 VPRLLMMAC*IFPLEGFGAGAGVSSPATAGVLARFL 532
V R L +A ++ + GF GAG+ +P A +L F+
Sbjct: 197 VSRELSIAGKVYRIAGFAKGAGMINPNLATLLGLFV 232
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 579 PPHRNLPEGRFNRPSSRAVEPESRRTRTSPFKP 677
PP+ PE R+N + P S+ R P +P
Sbjct: 80 PPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEP 112
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 506 RAAKSNYSGKKRANTPAVAGEDTPAPAPKPSRGKI 610
R ++ + KR + A E PAP P P G I
Sbjct: 233 RRSRFDQPPSKRMALTSTARESVPAPLPSPPSGPI 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,816
Number of Sequences: 5004
Number of extensions: 54644
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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