Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0479.Seq
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 32 0.38
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12) 30 1.5
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 30 1.5
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 30 2.0
SB_33455| Best HMM Match : Keratin_B2 (HMM E-Value=4.2) 30 2.0
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12) 29 2.7
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 29 2.7
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 2.7
SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96) 29 2.7
SB_8439| Best HMM Match : rve (HMM E-Value=1.5e-18) 29 4.7
SB_20529| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 29 4.7
SB_47491| Best HMM Match : Acyl-CoA_dh_N (HMM E-Value=0.36) 28 6.2
SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 32.3 bits (70), Expect = 0.38
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 423 KKKRAQAAEAKSRGSTVTEPAAPSDAGGELPNRITVVRNVPTHQPL-PAKILLPPHRNLP 599
K +R ++A AKS+ +T PA+ S G N TV +PL AK P
Sbjct: 1711 KPERPKSAAAKSQANT--RPASKSTPSGPASNNGTVAAKPSQARPLASAKRPASAQAGRP 1768
Query: 600 EGRFNRPSSRAVEPESRRTRTSP 668
+P S V+P S +T T P
Sbjct: 1769 ANGAAKPDS--VKPSSAKTTTRP 1789
>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
Length = 469
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 562 RRRYSCPRTETFQREDSTGH-HQEPWNLKAEEPERVRSNQH 681
+RR+SCP + + D +GH H + E +R R +H
Sbjct: 246 KRRHSCPSQQQLHQRDDSGHSHGHAHTPHSHEGKRGRKREH 286
>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
Length = 934
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/94 (27%), Positives = 36/94 (38%)
Frame = +3
Query: 387 PFRSNNDLLEILKKKRAQAAEAKSRGSTVTEPAAPSDAGGELPNRITVVRNVPTHQPLPA 566
PF S D L + KRA+ + K R S + + T NVP
Sbjct: 534 PFESTYDTLLLRNNKRAKKDQGKLRSIIAKAAGTSSLCASSVSSTRTRQNNVPFLGLQTG 593
Query: 567 KILLPPHRNLPEGRFNRPSSRAVEPESRRTRTSP 668
+ LP H ++ + R +S V R T TSP
Sbjct: 594 YVTLPWHADVTV--WQRAASSNVGRNMRDTGTSP 625
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 437 TSC*SQISRFNSNRTRGSFRCWWRAAKSNYSGKKR 541
T+C ++ SR N TR SF W A + N ++R
Sbjct: 1455 TACPTEDSRRTLNATRESFESRWEAVRKNAESRRR 1489
>SB_33455| Best HMM Match : Keratin_B2 (HMM E-Value=4.2)
Length = 388
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 564 AKILLPPHRNL-PEGRFNRPSSRAVEPESRRTRTS 665
++ + P R + P R RPSSRA+ P SR R S
Sbjct: 124 SRAIRPSSRTIRPSNRAIRPSSRAIRPSSRTIRPS 158
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 567 KILLPPHRNL-PEGRFNRPSSRAVEPESRRTRTS 665
+I+ P R + P R RPSSRA+ P SR R S
Sbjct: 97 RIIRPSTRAIRPSTRAIRPSSRAIRPSSRAIRPS 130
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 597 PEGRFNRPSSRAVEPESRRTRTS 665
P R RPSSRA+ P SR R S
Sbjct: 115 PSSRAIRPSSRAIRPSSRTIRPS 137
>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
Length = 521
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 546 THQPLPAKILLPPHRNLPEGRFNRPSSRAVEPESRRTRTSP 668
T +P P P LP+ R RP +R P+ R R P
Sbjct: 280 TQRPRPKTRRPEPRTELPQPRTYRPETRTYRPDPRTYRPDP 320
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 536 KRANTPAVAGEDTPAPA-PKPSRGKIQQAIIKSRGT*KPKNQNESV 670
+ A+TP+ E+TP PA P S+ +Q K T +P+ + E V
Sbjct: 488 QEASTPSTPVEETPTPAQPSESQETEEQQECKEEPTEEPQKEEEIV 533
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 432 RAQAAEAKSRGST-VTEPAAPSDAGGELPNRITVVRNVPTHQPLPAK 569
R++AA + SR T T A + G LP+ V P+ +P+PAK
Sbjct: 695 RSRAASSPSRPITKATSGAGDTQTSGSLPSNGLVKPPQPSAEPIPAK 741
>SB_9206| Best HMM Match : AT_hook (HMM E-Value=0.96)
Length = 570
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 1/96 (1%)
Frame = +3
Query: 393 RSNNDLLEILKKKRAQAAEAKSRGSTVTEPAAPSDAGGEL-PNRITVVRNVPTHQPLPAK 569
R + L KK + A ++ TVT + S+ E+ P + + R P
Sbjct: 383 RDRSKLQAFPTKKATKKAFSRGARKTVTTADSASEPEEEVSPKKGAIGRAKQQTSPTKKS 442
Query: 570 ILLPPHRNLPEGRFNRPSSRAVEPESRRTRTSPFKP 677
P + + SSRA R+ TSP KP
Sbjct: 443 TTRSPRKTSEDVEMEVTSSRASSRARRKPETSPTKP 478
>SB_8439| Best HMM Match : rve (HMM E-Value=1.5e-18)
Length = 317
Score = 28.7 bits (61), Expect = 4.7
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = +3
Query: 360 KKLIDGGVRPFR--SNNDLLEILKKKRAQAAEAKSRGSTVTEPAAPSDAG-GELPNRITV 530
K + G +P + N+ + + KK+ A K T ++ G G NR +
Sbjct: 207 KYYFNRGAKPLAPLTPNEGVRVYDKKKWIPATVKQEAGTPRSYIIQTETGQGLRRNRRHL 266
Query: 531 VRNVPTHQPLPAKILLPPHRNLPEGRFNRPSSRAVEPESRRTRTSPFKPARF 686
++ T++ P + PP P+ +P++ +PE RR+ S P R+
Sbjct: 267 LK---TNEQAPE--VKPPEPEQPDSPTEQPTAPKEQPELRRSNRSRNAPTRY 313
>SB_20529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = +3
Query: 507 ELPNRITVVRNVPTHQPLPAKILLPPHRNLPEGRFNRPSSRAVEPESRRTRTSPFK 674
E P + RN P HQPLPA + R P + R + ++ TS K
Sbjct: 302 EPPENLVCRRNAPGHQPLPALPVQGRERGPPGAGIKSENMRKLRSKAGDKATSNAK 357
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +3
Query: 480 PAAPSDAGGEL---PNRITVVRNVPTHQPLPAKILLPPHRNL---PEGRFNRPSSRAVE 638
P P+ AG L P+ V + +P H+P+ ++ + HR + P+ RPS +E
Sbjct: 271 PTTPTSAGAPLSSPPSAAAVAKKLPEHKPMELRVQI--HRTMSLPPDAGRGRPSVPKLE 327
>SB_47491| Best HMM Match : Acyl-CoA_dh_N (HMM E-Value=0.36)
Length = 431
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 542 ANTPAVAGEDTPAPAPKPSRGKIQQAIIKSRGT 640
A TP+ AG++TP P PS K ++ K++ T
Sbjct: 341 AATPSTAGDETPFPESDPSTPKRGKSSDKTKDT 373
>SB_52575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1267
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 470 SNRTRGSFRCWWRAAKSNYSGKKRANTPAVAGEDTPAP 583
+N T R W++ ++ + KK N P++ G+D P
Sbjct: 778 TNLTEARVRVWFKNRRAKWR-KKEKNNPSILGQDKTGP 814
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,507,311
Number of Sequences: 59808
Number of extensions: 460896
Number of successful extensions: 1456
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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