Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0479.Seq
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-15|CAA82385.1|  193|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z29117-14|CAA82386.1|  190|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z22179-16|CAA80172.1|  193|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z22179-15|CAA80173.1|  190|Caenorhabditis elegans Hypothetical p...    29   2.4  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like ...    29   3.2  
U80032-5|AAB53878.1|  552|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa ...    29   4.2  
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    28   5.5  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF039718-5|AAP68905.1|  760|Caenorhabditis elegans Prion-like-(q...    28   7.3  
AF039718-4|AAP68906.2|  696|Caenorhabditis elegans Prion-like-(q...    28   7.3  
Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z29117-15|CAA82385.1|  193|Caenorhabditis elegans Hypothetical
           protein C48B4.12b protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 413 GNPKEKAGTSC*SQISRFNSNRTRGSFRCWWRAAKSNYSGKKRANTPAVA--GEDTPAPA 586
           G+PK+  G       SRF  +    S++C  R  ++  SG  + N P +   GE+TP P 
Sbjct: 28  GSPKKPTG----DWPSRFPQHPAGFSYKCKNRQFET--SGPSQ-NQPPIGNDGEETPKPT 80

Query: 587 PKPS 598
           PKP+
Sbjct: 81  PKPT 84


>Z29117-14|CAA82386.1|  190|Caenorhabditis elegans Hypothetical
           protein C48B4.12a protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 413 GNPKEKAGTSC*SQISRFNSNRTRGSFRCWWRAAKSNYSGKKRANTPAVA--GEDTPAPA 586
           G+PK+  G       SRF  +    S++C  R  ++  SG  + N P +   GE+TP P 
Sbjct: 25  GSPKKPTG----DWPSRFPQHPAGFSYKCKNRQFET--SGPSQ-NQPPIGNDGEETPKPT 77

Query: 587 PKPS 598
           PKP+
Sbjct: 78  PKPT 81


>Z22179-16|CAA80172.1|  193|Caenorhabditis elegans Hypothetical
           protein C48B4.12b protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 413 GNPKEKAGTSC*SQISRFNSNRTRGSFRCWWRAAKSNYSGKKRANTPAVA--GEDTPAPA 586
           G+PK+  G       SRF  +    S++C  R  ++  SG  + N P +   GE+TP P 
Sbjct: 28  GSPKKPTG----DWPSRFPQHPAGFSYKCKNRQFET--SGPSQ-NQPPIGNDGEETPKPT 80

Query: 587 PKPS 598
           PKP+
Sbjct: 81  PKPT 84


>Z22179-15|CAA80173.1|  190|Caenorhabditis elegans Hypothetical
           protein C48B4.12a protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 413 GNPKEKAGTSC*SQISRFNSNRTRGSFRCWWRAAKSNYSGKKRANTPAVA--GEDTPAPA 586
           G+PK+  G       SRF  +    S++C  R  ++  SG  + N P +   GE+TP P 
Sbjct: 25  GSPKKPTG----DWPSRFPQHPAGFSYKCKNRQFET--SGPSQ-NQPPIGNDGEETPKPT 77

Query: 587 PKPS 598
           PKP+
Sbjct: 78  PKPT 81


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +3

Query: 387 PFRSNNDLLEILKKKRAQAAEAKSRGSTVTEPAAPSDAGGELPNR 521
           P  +  D+   LKK   Q A AK+ G +    +A +D GG  P R
Sbjct: 299 PVSNTPDITSNLKKVVEQVALAKAAGKSSMTVSALADVGGSKPKR 343


>AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like
           (grd related) protein29 protein.
          Length = 172

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 673 LNGLVLVLRLSGSTALDDGLLNLPSGRFRCGGRSIFAGNGWCVG 542
           ++ L+ +L  S  T    GL N+  G   CGG     G G C G
Sbjct: 2   ISSLLFLLVFSSITTACPGLFNMLGGAGGCGGGGGCGGGGGCGG 45


>U80032-5|AAB53878.1|  552|Caenorhabditis elegans Hypothetical
           protein C32E12.1 protein.
          Length = 552

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 515 KSNYSGKKRANTPAVAGEDTPAPAPKPSRGKIQQ--AIIKSRGT*KPKNQNE 664
           K N  GKK +  P  +G  T   APK S+G+ Q+   ++++    KPK   E
Sbjct: 122 KKNSKGKKPSTDPLFSGPLT--QAPKRSKGETQELNQLLENNAQNKPKKVKE 171


>U39655-3|AAA80409.2|  718|Caenorhabditis elegans Fatty acid coa
           synthetase familyprotein 17 protein.
          Length = 718

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 516 LAARHQHRKEPRVLLLLNREIWLQQLVPAFSLGFPVNHCYS 394
           L +  Q  KEP +L    RE W+   +    + FP+   Y+
Sbjct: 154 LTSLGQQEKEPIILFAETREEWMTTALACMKMNFPIATMYA 194


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +3

Query: 423 KKKRAQAAEAKSRGSTVTEPAAPSDAGGELPNRITVVRNVPTHQPL-PAKILLPPHRNLP 599
           K +R++  ++ +  S++ E A+        P  I      P+  P  P+K   P  R  P
Sbjct: 192 KGRRSELFQSFNADSSIVEEASTIPTNRRAPMLIA-----PSSTPAGPSK---PTARKPP 243

Query: 600 EGRFNRPSSRAVEPESRRTRTS 665
             RF +PS+ A+ P+S  T  S
Sbjct: 244 TPRFKKPSTPALAPQSDDTELS 265


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical
           protein K10D2.3 protein.
          Length = 1425

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 467 NSNRTRGSFRCWWRAAKSNYSGKK-RANTPAVAGEDTPAPAPKPSRGKIQQAIIKSRGT* 643
           + +R RG      R   S  SG+K  +N+PA +   +   +  PS+ +    I+  + T 
Sbjct: 7   SGSRRRGGALGGGRGGNSQNSGRKRSSNSPADSASSSQKTSRNPSQNRPPMNIVPQKVTI 66

Query: 644 KPKNQNESVQTSTV 685
             +NQ +S  TS +
Sbjct: 67  LKRNQ-DSQPTSPI 79


>AF039718-5|AAP68905.1|  760|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform a protein.
          Length = 760

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 489 PSDAGGELPNRITVVRNVPTHQPLPAKILLPPHRNLPEGRFNRPSSRAVEPESRRTRTSP 668
           P+++G   P + T VRN   H P P    LPP    P   F+R    +    +  T T+ 
Sbjct: 587 PTNSGSSTPPQ-TSVRNPKYHVPTPTD--LPPPPVWPAPNFDRRRKSSETSFTTNTTTNT 643

Query: 669 FKPA 680
             P+
Sbjct: 644 LTPS 647


>AF039718-4|AAP68906.2|  696|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 64,
           isoform b protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +3

Query: 489 PSDAGGELPNRITVVRNVPTHQPLPAKILLPPHRNLPEGRFNRPSSRAVEPESRRTRTSP 668
           P+++G   P + T VRN   H P P    LPP    P   F+R    +    +  T T+ 
Sbjct: 489 PTNSGSSTPPQ-TSVRNPKYHVPTPTD--LPPPPVWPAPNFDRRRKSSETSFTTNTTTNT 545

Query: 669 FKPA 680
             P+
Sbjct: 546 LTPS 549


>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 420 LKKKRAQAAEAKSRGSTVTEPAAPSDAGGELPNRITVVRNVPT 548
           + KK A+  +A +R  TVT P   +   G LP+  TV+ N+ T
Sbjct: 82  ITKKSAKLFDAYARMPTVTLPRITAYLTGTLPSFGTVLTNLAT 124


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 420 LKKKRAQAAEAKSRGSTVTEPAAPSDAGGELPNRITVVRNVPT 548
           + KK A+  +A +R  TVT P   +   G LP+  TV+ N+ T
Sbjct: 82  ITKKSAKLFDAYARMPTVTLPRITAYLTGTLPSFGTVLTNLAT 124


>U97010-6|AAL65797.1|  501|Caenorhabditis elegans Hypothetical
           protein W08A12.1a protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 519 RITVVRNVPTHQPLPAKILLPPHRNLPEGRFNRPSSRAVEPESRRTRTSPFKP 677
           R+   R V  HQP+   +  PP  ++   R     S  V   S   R SP  P
Sbjct: 16  RMPPARTVGPHQPVQPMVAPPPTGSMIPPRRQSSMSSTVAAASASRRVSPIYP 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,188
Number of Sequences: 27780
Number of extensions: 325414
Number of successful extensions: 1381
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)