Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0479.Seq
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   3.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.4  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 414 EILKKKRAQAAEAK 455
           E+L KKR++ AEAK
Sbjct: 135 EVLNKKRSKKAEAK 148


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 290 TFVFILCVFLW 258
           T VF+ C+F+W
Sbjct: 217 TKVFVTCIFIW 227


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 586  TETFQREDSTGHHQEPWNLK 645
            T  F +ED   HH +  NLK
Sbjct: 1029 TVDFSKEDGKEHHLQIMNLK 1048


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 290 TFVFILCVFLW 258
           T VF+ C+F+W
Sbjct: 217 TKVFVTCIFIW 227


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 231 TDHNNHNIAPQEYAEYEDEGDY 296
           T    + I PQE A + DEG +
Sbjct: 119 TSVEEYAIIPQEIAGFADEGPF 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,464
Number of Sequences: 438
Number of extensions: 4301
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)