Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0479.Seq
(694 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02180.1 68418.m00139 amino acid transporter family protein b... 30 1.7
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 30 1.7
At2g07770.1 68415.m01005 hypothetical protein low similarity to ... 30 1.7
At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C... 29 2.2
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami... 29 2.2
At3g51620.2 68416.m05659 expressed protein 29 2.9
At5g19620.1 68418.m02335 outer membrane OMP85 family protein wea... 29 3.9
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa... 29 3.9
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 28 5.1
At4g28610.1 68417.m04091 myb family transcription factor, putati... 28 5.1
At3g51620.1 68416.m05658 expressed protein 28 5.1
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 28 6.8
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 28 6.8
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p... 28 6.8
At5g55080.1 68418.m06866 Ras-related GTP-binding protein, putati... 27 8.9
At5g42560.1 68418.m05180 abscisic acid-responsive HVA22 family p... 27 8.9
>At5g02180.1 68418.m00139 amino acid transporter family protein
belongs to INTERPRO:IPR002422 amino acid/polyamine
transporter, family II
Length = 550
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -1
Query: 409 KSLLLLNGLTPPSISFLP 356
+S+ LL G+TPPS+SF+P
Sbjct: 75 QSMDLLTGMTPPSVSFMP 92
>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 452
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 512 AKSNYSGKKRANTPAVAGEDTPAPAPKPSRGKIQQAIIKSRGT*KPKNQNESVQT 676
A+S++S K+ N P + P P P P+ + A IKS T K Q+ES +T
Sbjct: 195 ARSHHSQSKKQN-PEILTRKNPVPNPVPAPVDTESAKIKSSSTLTIK-QSESPKT 247
>At2g07770.1 68415.m01005 hypothetical protein low similarity to KED
[Nicotiana tabacum] GI:8096269; contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 518
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 384 RPFRSNNDLLEILKKKRAQAAEAKSRGSTVTEPAAPSDAG 503
R F +N L ++K R A E K +G +PSD G
Sbjct: 202 RSFVANKALSTVVKAPRKAAVEKKGKGKAAAALTSPSDGG 241
>At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C,
putative protein phosphatase 2C, Schizosaccharomyces
pombe, PIR2:S54297
Length = 357
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 486 APSDAGGELPNRITVVRNVPTHQPLPAKILLPPHRNLPEGRFNRPSS 626
AP+ +GGE + +T++ V P P++ L P + EG + PSS
Sbjct: 310 APNTSGGEGCDNMTMIL-VRFKNPTPSETELKPEASQAEGNHDEPSS 355
>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
protein similar to TAR RNA loop binding protein [Homo
sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
rRNA Methylase (RNA methyltransferase, TrmH) family
Length = 1850
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/72 (31%), Positives = 33/72 (45%)
Frame = -2
Query: 561 ATAGVLARFLPL*FDLAARHQHRKEPRVLLLLNREIWLQQLVPAFSLGFPVNHCYS*TVL 382
A A VL F+ L A + + +L +++ E WLQ VPAF +NH + VL
Sbjct: 1005 ALASVLNAFVSL-CSAGAFNLLENDSTLLSMVDGEFWLQVSVPAFVRN--INHLLTAGVL 1061
Query: 381 LHRL*VSCLRWK 346
+ L WK
Sbjct: 1062 VRSRRAVLLSWK 1073
>At3g51620.2 68416.m05659 expressed protein
Length = 542
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +3
Query: 543 PTHQPLPAKILLPPHRNLP----EGRFNRPSSRAVEPES-RRTRTSP 668
PT +PLP ++L PP + P EG NRP P S + R +P
Sbjct: 482 PT-EPLPVEVLSPPEDSKPRDSIEGHHNRPHRPKPRPSSTQEERVTP 527
>At5g19620.1 68418.m02335 outer membrane OMP85 family protein weak
similarity to chloroplastic outer envelope membrane
protein (OEP75) [Pisum sativum] GI:633607; contains Pfam
profile PF01103: outer membrane protein, OMP85 family
Length = 732
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 627 LMMAC*IFPLEGFGAGAGVSSPATAGVLA 541
L+M C P GF AG G+SS T+G L+
Sbjct: 389 LIMNCVERPSGGFSAGGGISSGITSGPLS 417
>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
family protein similar to DNA-binding protein gi|601843
[Arabidopsis thaliana], remorin [Solanum tuberosum]
GI:1881585; contains Pfam profiles PF03763: Remorin
C-terminal region, PF03766: Remorin N-terminal region
Length = 212
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 542 ANTPAVAGEDTPAPAPKPSRGKIQQAIIKSRGT*KPKNQ 658
A+TPA A + PAPAP P+ + + + + + P Q
Sbjct: 23 ADTPAPAPAEIPAPAPAPTPADVTKDVAEEKIQNPPPEQ 61
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 519 RITVVRNVPTHQPLPAKILLPPHRNLPEGRFN 614
R+ R V T QPL I +PP PEGRFN
Sbjct: 333 RLGYGRKVTTGQPLELPIHIPP----PEGRFN 360
>At4g28610.1 68417.m04091 myb family transcription factor, putative
/ phosphate starvation response regulator, putative
(PHR1) contains Pfam profile: PF00249 myb-like
DNA-binding domain; identical to cDNA phosphate
starvation response regulator 1 (phr1 gene) GI:15384675
Length = 409
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 425 EKAGTSC*SQISRFNSNRTRGSFRCWWRAAKSNYSGKKRANTPAVAGEDT----PAPAPK 592
E+ G + NS T+G+ AAKS KK A++ V E+T +P+
Sbjct: 342 EEQGKYLQMMFEKQNSGLTKGTASTSDSAAKSEQEDKKTADSKEVPEEETRKCEELESPQ 401
Query: 593 PSRGKI 610
P R KI
Sbjct: 402 PKRPKI 407
>At3g51620.1 68416.m05658 expressed protein
Length = 755
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = +3
Query: 543 PTHQPLPAKILLPPHRNLP----EGRFNRPSSRAVEPES 647
PT +PLP ++L PP + P EG NRP P S
Sbjct: 708 PT-EPLPVEVLSPPEDSKPRDSIEGHHNRPHRPKPRPSS 745
>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
contains Pfam profile PF00856: SET domain
Length = 1423
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 574 SCPRTETFQREDSTGHHQEPWNLKAEEPERVR 669
S P+++ R G H W+LKA ER R
Sbjct: 1180 SIPKSDGCARTSINGWHWHAWSLKASAEERAR 1211
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 390 FRSNNDLLEILKKKRAQAAEAKSRGSTVTEPAAPSDAG 503
F +NN +++ R A E K +G T +PSD G
Sbjct: 323 FVANNAPSTVVQAPRKAAVEKKGKGKTAAALTSPSDEG 360
>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 477
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -2
Query: 669 TDSFWFFGFQ--VPRLLMMAC*IFPLEGFGAGAGVSSPATAGVLAR 538
T +FW F VP ++ MA I GF GA V++P AGVL R
Sbjct: 301 TGNFWGFEAHNVVPDIVTMAKGIG--NGFPLGAVVTTPEIAGVLTR 344
>At5g55080.1 68418.m06866 Ras-related GTP-binding protein, putative
similar to GTP-binding protein atran3 GI:2058280 from
[Arabidopsis thaliana]
Length = 222
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 464 FNSNRTRGSFRCWWRAAKSNYSGKKRA 544
F +NR + F CW A + YSG K A
Sbjct: 55 FFTNRGKIRFECWDTAGQEKYSGLKDA 81
>At5g42560.1 68418.m05180 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 296
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 557 VAGEDTPAPAPKPSR-GKIQQAIIKSRGT*KPKNQNESVQTST 682
VA + TP P P R G+ QA K + P+++ E V S+
Sbjct: 142 VAAQSTPRPQPPQKRGGRANQAPAKPKKAPVPQSEPEEVSLSS 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,855,213
Number of Sequences: 28952
Number of extensions: 308800
Number of successful extensions: 1093
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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