Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0478.Seq
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    26   4.5  
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans...    26   5.9  

>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 544 FLCQXLFMNIXYLIDRSSVKGQSTRWCPGNVSKDXRFI 431
           FLC  L + I   ID+S + G S  +   ++++  RFI
Sbjct: 64  FLCSILGIVIVNSIDKSRLSGDSFAYTDESLARKARFI 101


>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 308 GVVCAAAAGPPTNRERLMLVLGPT 379
           G++  A AGP TN  +  + L PT
Sbjct: 86  GILSMANAGPNTNSSQFFITLAPT 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,872
Number of Sequences: 5004
Number of extensions: 47448
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)