Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0478.Seq
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)                 29   3.6  
SB_22271| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_55853| Best HMM Match : Collagen (HMM E-Value=0.0035)               28   8.3  

>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
          Length = 365

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = -2

Query: 696 KHVLETLGPVKVNEILSQKKVWFNRYSENRFFNSIGDAR 580
           + + +T+GP K ++  S   +W+N+Y+ +R  +  G+AR
Sbjct: 6   RQLAQTVGPQKCDKPKSTYNIWYNKYTGDR--HKPGEAR 42


>SB_22271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 6   THHLLQIVDYVGNAW-EEVVRCGGGKVRYYSE*GGRRPDTKRTVGSLLVI 152
           T HL++  D V   W +E +R  G + R+ ++ G   PDTK T+G ++++
Sbjct: 50  TKHLIKCKDAVWKRWTDEYLR--GLRERHRAKAGA--PDTKPTIGEVVIV 95


>SB_55853| Best HMM Match : Collagen (HMM E-Value=0.0035)
          Length = 453

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 248 ALDRFVRQFAAIRGTRNKTL*SCPPRGTRLPCYDKERSH 132
           A DR   + + IR  RN     C  R  +LPC D+ R +
Sbjct: 410 AADRSEAEQSCIRLARNSPGNICDQRRNKLPCIDRRRGN 448


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,799,599
Number of Sequences: 59808
Number of extensions: 368915
Number of successful extensions: 807
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)