Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0478.Seq
         (697 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    29   8.0  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    29   8.0  

>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch
           depedent uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 439 GDLLKRXRDTSAWTVPLRSTGQLGTKYS*RXTDTKKSPMMKTFKIKY 579
           GD+L   R  S WT     +GQ   +     +DTK+ PM  + ++ Y
Sbjct: 298 GDILIDDRRASLWTPHHDESGQRQQRTGTASSDTKQEPMNVSSELSY 344


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
           protein.
          Length = 1738

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 439 GDLLKRXRDTSAWTVPLRSTGQLGTKYS*RXTDTKKSPMMKTFKIKY 579
           GD+L   R  S WT     +GQ   +     +DTK+ PM  + ++ Y
Sbjct: 298 GDILIDDRRASLWTPHHDESGQRQQRTGTASSDTKQEPMNVSSELSY 344


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,123,574
Number of Sequences: 53049
Number of extensions: 560750
Number of successful extensions: 972
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)