Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0478.Seq
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20680.1 68418.m02456 expressed protein predicted proteins, A...    28   5.1  
At5g39430.1 68418.m04776 hypothetical protein                          28   6.8  
At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 fami...    28   6.8  
At1g08700.1 68414.m00966 presenilin family protein similar to SP...    27   9.0  

>At5g20680.1 68418.m02456 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 551

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -1

Query: 322 GTHYTNAKIVISKSLLHV*RSADARRSIGSCGSSRQFAALATKHF----SPVHPGALGF 158
           G H+   K+  +K ++HV    +  R + + G+++ F   +T  +     P+HPG   F
Sbjct: 391 GHHWNRGKLNGNKWVMHVNGVPNTNRKLAALGNAKNFTIHSTVSWVNSQLPLHPGLKAF 449


>At5g39430.1 68418.m04776 hypothetical protein 
          Length = 511

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -3

Query: 317 TLHQCKNSNLKVSLTRLTFSRREALDRFVRQFAAIRGTRNKTL*SCPPRGTRLPCYDKER 138
           TL+   + N K ++ +++F RR      V +  +     +K L   P  G  +PCY KE+
Sbjct: 188 TLNSPTSQNRKSAVYQVSFKRRSCDGEEVTEHRS-----SKRLLYRPKAGYTIPCYVKEK 242

Query: 137 SHSS 126
             SS
Sbjct: 243 HQSS 246


>At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 family
           protein very low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 632

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 681 TLGPVKVNEILSQKKVWFNRYSENRFFNSI-GDARIL 574
           TLGP K+    SQ+KVW N+  E  F N + G ARIL
Sbjct: 297 TLGP-KITNWDSQRKVWLNQNPE--FPNIVNGKARIL 330


>At1g08700.1 68414.m00966 presenilin family protein similar to
           SP|P52166 Presenilin sel-12 {Caenorhabditis elegans};
           contains Pfam profile PF01080: Presenilin
          Length = 453

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 375 GPRTNIKRSRLVGGPAAAAHTT 310
           G R  ++RS LVG P+A+ H+T
Sbjct: 295 GSRGGLERSPLVGSPSASEHST 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,885
Number of Sequences: 28952
Number of extensions: 257481
Number of successful extensions: 544
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)