Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0477.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    29   0.48 
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   0.64 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.5  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    25   7.9  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   7.9  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 478 LTG*SGPMMVLENLLNTIGHRRWGE 404
           L G S PM+ L +L+ TI H  WGE
Sbjct: 138 LQGLSDPMVPLSSLIKTIPHGLWGE 162


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +3

Query: 12   GGSALSFMKSHILSKSVNKIDIFLNTIRCFSVTKTRN---MKLVQFSYKDSPKNIRVGYL 182
            G    SF K+  LSKS+  +DI  N ++  +V K       KL Q  Y +   N    + 
Sbjct: 886  GNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSGNTWFRFS 945

Query: 183  EGDD 194
            E +D
Sbjct: 946  EHED 949


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 284 KSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHC 391
           K   P + PL S+T   P H  DK   + +N ++ C
Sbjct: 185 KMPSPNSQPLQSITPNYPTHREDKFDLLIINIEEAC 220


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 353 KILCIGLNYKDHCQEQN 403
           K++CIG NY  H +E N
Sbjct: 7   KVVCIGRNYAAHIRELN 23


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 171 HVYFLDYLCMKTEL 130
           H YF D+LC+ TEL
Sbjct: 767 HFYFRDHLCVATEL 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,689
Number of Sequences: 5004
Number of extensions: 48830
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)