Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0477.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485...    31   0.67 
09_02_0526 + 10219803-10221107                                         29   2.7  
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101...    29   2.7  
03_01_0202 + 1605703-1606402,1606681-1606824,1606911-1607063,160...    28   6.2  
03_02_0111 + 5688649-5688942                                           28   8.2  

>04_03_0658 + 18447986-18448117,18448204-18448317,18448388-18448507,
            18448589-18449215,18449289-18449462,18449545-18449809,
            18449889-18449959,18450043-18450145,18450221-18450280,
            18450533-18450744,18450830-18450901,18451446-18451502,
            18451598-18451882,18452359-18452371,18452396-18452463,
            18452649-18452747,18452836-18452967,18453038-18453141,
            18453234-18453423,18453519-18453524
          Length = 967

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 54   KSVNKIDIFLNTIRCFSVTKTRNMKLVQFSYKDSPKNIRVGYL 182
            +  N+ID  + T++   + + R M   QFS KD P NIR+ Y+
Sbjct: 899  RQTNRIDCGIFTLKFMEIWRPRVMLTNQFSQKDIP-NIRIQYV 940


>09_02_0526 + 10219803-10221107
          Length = 434

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 447 STIIGPDQPVRIRTDVTKXVDGSGAVRXCGAPRPXXXXXXDALQHRGR 590
           ST  G D+ +R+R  +T+ +D    +R  G PR       DA+   GR
Sbjct: 208 STFTGADEELRLR--LTRSMDLGDLIRPKGVPRRQRHFDADAMHFAGR 253


>07_01_0139 -
           1014952-1015165,1015271-1015350,1015420-1015629,
           1015925-1016044,1016650-1016709,1017129-1017204,
           1018189-1018352,1018428-1018490,1018815-1018902,
           1018997-1019647,1019965-1020449
          Length = 736

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 378 TRITAKSRISPHLLXPMVFSKFSSTIIGPDQPVRIRTDVTKXVDGSGAVRXCGAPRP 548
           T +T +S  S  L  P++ SK SS    P  P     +    ++G+G V     PRP
Sbjct: 275 TGVTEQSTFSNSLRSPILMSKNSSAPPSPLHPKLFPENNMSRIEGNGNVSFHPLPRP 331


>03_01_0202 +
           1605703-1606402,1606681-1606824,1606911-1607063,
           1607236-1607351,1607737-1607904,1607990-1608214,
           1608711-1608833
          Length = 542

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 156 PKNIRVGYLEGDDIVDINKADSSLP 230
           P+   VGY++GD  +D+ K D + P
Sbjct: 19  PREHAVGYVQGDSYLDLKKFDDTWP 43


>03_02_0111 + 5688649-5688942
          Length = 97

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 655 CPQGXPXXXQAPGADGPARRXTRPRC-CSAS 566
           CP   P    A  A GP RR  R RC CSAS
Sbjct: 26  CPTALPLTAAAAAATGPHRRG-RGRCYCSAS 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,268,017
Number of Sequences: 37544
Number of extensions: 356755
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)