Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0477.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)         47   1e-05
SB_21752| Best HMM Match : Death (HMM E-Value=7.1e-05)                 29   3.6  
SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_36584| Best HMM Match : ResIII (HMM E-Value=0.95)                   29   4.8  
SB_2065| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_56636| Best HMM Match : Toxin_4 (HMM E-Value=2.4)                   28   8.4  
SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19)                   28   8.4  
SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_37341| Best HMM Match : FAA_hydrolase (HMM E-Value=3.3e-08)
          Length = 223

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +2

Query: 314 SSVTLTAPIHGVDKILCIGLNYKDHCQEQNLTPP 415
           S++ L API+  +KI+C G+NY DHC EQN+  P
Sbjct: 16  SNLKLKAPIYNPEKIICTGMNYADHCYEQNMPIP 49



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 423 PMVFSKFSSTIIGPDQPVRIRTDVTKXVDG 512
           P++FSKF+S I  P  P+   T+     DG
Sbjct: 52  PVIFSKFASAIAAPGDPIPYGTETEVSCDG 81


>SB_21752| Best HMM Match : Death (HMM E-Value=7.1e-05)
          Length = 281

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 305 IPLSSVTLTAPIHGVDKILCIGLNYKDHCQEQNL 406
           +PL  +    P+  +DK+ C+ + YK+ C  Q+L
Sbjct: 4   VPLQKIVENRPL--LDKLRCLDIEYKEKCNWQHL 35


>SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 798

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +1

Query: 265 RKSEEVEINKTSNYTTIISHSNCTHTWCR*NPLYRLELQGSLPRAESHPTSCXR 426
           RK+ E+      + T+++   +C  TW R      +E   ++ RA+   T C +
Sbjct: 732 RKASEIRTGSNPSPTSVLVCRSCGRTWLRALGFLVMERNANVHRADVMDTDCPK 785


>SB_36584| Best HMM Match : ResIII (HMM E-Value=0.95)
          Length = 1244

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 491 CY*XGGWEWSCAXLWGPKAS-CVXXEGRAAAPWP 589
           C+   G+EW+    WGPK S C+  E   A   P
Sbjct: 733 CHKKPGYEWTPEAAWGPKRSGCLAREPSTAPSLP 766


>SB_2065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 491 CY*XGGWEWSCAXLWGPKAS-CVXXEGRAAAPWP 589
           C+   G+EW+    WGPK S C+  E   A   P
Sbjct: 256 CHKKPGYEWTPEAAWGPKRSGCLAREPSTAPSLP 289


>SB_56636| Best HMM Match : Toxin_4 (HMM E-Value=2.4)
          Length = 434

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 506 GWEWSCAXLWGPKASCVXXEGRAAAPWPGXPS 601
           G+EW     WGPK S      +A  P P   S
Sbjct: 116 GYEWRPEAAWGPKRSGAWLGSQALVPQPAVRS 147


>SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19)
          Length = 1390

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 506 GWEWSCAXLWGPKASCVXXEGRAAAP 583
           G+EW     WGPK S     G + AP
Sbjct: 891 GYEWRPEAAWGPKRSGCLARGPSTAP 916


>SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 506 GWEWSCAXLWGPKASCVXXEGRAAAP 583
           G+EW     WGPK S     G + AP
Sbjct: 717 GYEWRPEAAWGPKRSGCLARGPSTAP 742


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,293,010
Number of Sequences: 59808
Number of extensions: 387749
Number of successful extensions: 885
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)