Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0477.Seq
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr... 29 4.2
L16621-5|AAA28230.1| 214|Caenorhabditis elegans Hypothetical pr... 29 4.2
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh... 29 4.2
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p... 29 4.2
AF125952-3|AAD14699.1| 475|Caenorhabditis elegans Hypothetical ... 28 7.4
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 28 7.4
AC006722-9|ABP57813.1| 475|Caenorhabditis elegans Hypothetical ... 28 7.4
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 27 9.8
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 27 9.8
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 27 9.8
>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
protein F19H8.1 protein.
Length = 1229
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 256 WRLRKSEEVEINKTSNYTTIIS--HSNCTHTWCR*NPLYRLELQGSL 390
W L E+E KT++ T+IS + T W R +P L L+G L
Sbjct: 35 WHLLDLLEIEYKKTADLHTLISSVSESLTMVWKRRDPKSELALKGLL 81
>L16621-5|AAA28230.1| 214|Caenorhabditis elegans Hypothetical
protein ZK688.3 protein.
Length = 214
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 353 KILCIGLNYKDHCQE 397
KI+C+G NYKDH E
Sbjct: 13 KIVCVGRNYKDHALE 27
>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
trehalose 6-phosphatesynthase protein.
Length = 1229
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 256 WRLRKSEEVEINKTSNYTTIIS--HSNCTHTWCR*NPLYRLELQGSL 390
W L E+E KT++ T+IS + T W R +P L L+G L
Sbjct: 35 WHLLDLLEIEYKKTADLHTLISSVSESLTMVWKRRDPKSELALKGLL 81
>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
trehalose-6-phosphate synthase protein.
Length = 1230
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 256 WRLRKSEEVEINKTSNYTTIIS--HSNCTHTWCR*NPLYRLELQGSL 390
W L E+E KT++ T+IS + T W R +P L L+G L
Sbjct: 35 WHLLDLLEIEYKKTADLHTLISSVSESLTMVWKRRDPKSELALKGLL 81
>AF125952-3|AAD14699.1| 475|Caenorhabditis elegans Hypothetical
protein C01B4.7 protein.
Length = 475
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 399 CSWQ*S-L*FKPIQRILSTPCMGAVRVTDDSGIVAGFVDFNFFTF 268
C+WQ S + F PI IL G + G+ GF F FF F
Sbjct: 186 CAWQFSNVIFMPISGILCDSSFGWRSIYYVFGVATGFFYFVFFMF 230
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = -2
Query: 682 GPMDFP*XECPQGXPXXXQAPGADGPARRXTRP-RCCSASFXXXAAGLGAP 533
GP F +CP G P APG GP+ +P R AS G P
Sbjct: 163 GPDSFC-FDCPAGPPGPSGAPGQKGPSGAPGQPGRSGGASLPGPPGPAGPP 212
>AC006722-9|ABP57813.1| 475|Caenorhabditis elegans Hypothetical
protein Y19D10A.4 protein.
Length = 475
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 399 CSWQ*S-L*FKPIQRILSTPCMGAVRVTDDSGIVAGFVDFNFFTF 268
C+WQ S + F PI IL G + G+ GF F FF F
Sbjct: 186 CAWQFSNVIFMPISGILCDSSFGWRSIYYVFGVATGFFYFVFFMF 230
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -2
Query: 682 GPMDFP*XECPQGXPXXXQAPGADG-PARRXT 590
GPM P P G P APG DG P R T
Sbjct: 164 GPMGPPGPRGPPGVPGITGAPGLDGIPGRHGT 195
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 682 GPMDFP*XECPQGXPXXXQAPGADGPA 602
GP P + P G P +PG DGPA
Sbjct: 235 GPPGAPGNDGPPGPPGPKGSPGPDGPA 261
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 682 GPMDFP*XECPQGXPXXXQAPGADGPA 602
GP P + P G P +PG DGPA
Sbjct: 235 GPPGAPGNDGPPGPPGPKGSPGPDGPA 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,062
Number of Sequences: 27780
Number of extensions: 304242
Number of successful extensions: 872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -