Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0476.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    29   0.48 
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    28   1.5  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   2.6  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   3.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.4  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   4.5  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    26   4.5  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    26   6.0  

>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = +3

Query: 279 HRDSLVK--SG--TRKSIVEYEHLESVLRDEKAQQTELDCLNYLAQKQLVELLKKVPTEA 446
           H D L K  SG   R +I E EH ++       + T LD LN L + +  +   K  T  
Sbjct: 10  HSDDLNKEESGESNRVNIEEPEHHDN----SNKESTNLDDLNMLEEPKYHDNSNKESTNL 65

Query: 447 DELAMIENAWQQTSSYGEPASLGKQEIL 530
           D+L M+E      +S  E  +L    +L
Sbjct: 66  DDLNMLEEPEHHDNSKKESTNLDDSNML 93


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 52  KLIKMPTQVEQKVVDPEAELSNVQRTFQKLAPMCSVEKRSQGTPQLAPQA--KQLSILAN 225
           K +K  T+ ++  V  +   SNV   +    P+C +   +   P +A  A  KQ++ L +
Sbjct: 502 KSLKPDTENQESSVKNKKAKSNVNLQYSPKTPICKINDETLKPPTIANIAGHKQMNHLTS 561

Query: 226 ELKET 240
           E  ET
Sbjct: 562 ENIET 566


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 465 ENAWQQTSSYGEPASLGKQEILPLFNSDNKRVREEI 572
           EN     S+  E   +  + I+P  N DN+ VREE+
Sbjct: 39  ENILSSVSATVEKKEVNNKLIMPTANRDNQGVREEL 74


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/58 (22%), Positives = 28/58 (48%)
 Frame = -2

Query: 247 ITTFPSVHWRVWTAAWPVARVGVFLEISSRRCTSALAFETFSAHC*VQLQDRRLSVQL 74
           ++++ + +W ++   WP+   G F +I+       L+  T   H    L  R L+V++
Sbjct: 415 VSSWLNAYWSMFHVRWPILHRGTF-QITQAPLDLLLSMITLGMHSSNDLSIRSLAVEI 471


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 427 FSNSTSCFCAR*LRQSSSVCWAFSSLSTDSRCSYSTIDLRVPDFTRLSRWA 275
           F++       R LRQS+ +   F +LS D     S +  R P  TR  + A
Sbjct: 165 FTDEDVSIIVRRLRQSNVILPNFKALSADFMLRASPVSSRTPSPTRFPKHA 215


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 641 SQLPDGAVPMEC*SHFSQLINRWNLLPDSLVVRVEQGQNLLL-AQTSRFSIRRSLLPSVL 465
           S + D  V  E  S  +  + RW L+P   + R++  + LLL A T    + R+LL   +
Sbjct: 300 STVLDPFVLSESASTLNLSLMRWRLVPQLDLDRIQNSKCLLLGAGTLGCGVARNLLSWGV 359

Query: 464 YHC*FISF 441
            H  F+ +
Sbjct: 360 RHVTFVDY 367


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 11  SLGYFDCFTVYRFKN*SRCRHKLNRKSSILKL 106
           S+G FD + +Y      +C HK+   +SI+++
Sbjct: 16  SIGTFDGYKIYNCDPFGKCFHKIQGATSIVEM 47


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +3

Query: 366 QQTELDCLNYLAQKQLVELLKKVPTEADELAMIENAWQQTSSYGEPASLGKQEILPLFNS 545
           ++ E D  N    ++   LLK + T  D    +     + +SY  P  LGK    P +NS
Sbjct: 29  EKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGK----PFYNS 84

Query: 546 DNKRV 560
              +V
Sbjct: 85  TVAKV 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,575
Number of Sequences: 5004
Number of extensions: 59670
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)