Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0476.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0415 + 3037720-3039849 33 0.22
02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643... 31 1.2
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 30 1.5
11_01_0470 + 3645010-3647686,3647804-3648168 29 4.7
08_01_0998 - 10136050-10138356 29 4.7
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 29 4.7
03_03_0062 + 14170303-14170637,14171799-14172029,14172224-141723... 29 4.7
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336... 28 6.2
06_03_1369 + 29620958-29621030,29622421-29622452,29622538-296225... 28 6.2
>02_01_0415 + 3037720-3039849
Length = 709
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/84 (23%), Positives = 39/84 (46%)
Frame = +3
Query: 327 YEHLESVLRDEKAQQTELDCLNYLAQKQLVELLKKVPTEADELAMIENAWQQTSSYGEPA 506
+ ++ L D+ T L+CL++ + + + L ++ AW + S P
Sbjct: 225 HNNISGALPDDLFHATSLECLSFPNNDLQGTIDGVLMIKLSNLVFLDLAWNRFSGT-IPD 283
Query: 507 SLGKQEILPLFNSDNKRVREEIPS 578
S+GK + L F+ +N + E+PS
Sbjct: 284 SIGKLKRLQEFHMNNNNISGELPS 307
>02_05_1170 +
34663853-34663928,34664038-34664078,34664317-34664386,
34664499-34664647,34664784-34664879,34665406-34665476,
34665637-34665698,34665778-34665841,34665950-34666034,
34666129-34666255,34666381-34666454,34666539-34666599,
34666683-34666771,34666897-34667206,34667763-34667815,
34668299-34668370,34668648-34668914,34669015-34669047,
34669163-34669245,34669522-34669594,34669834-34670170,
34670302-34670633,34670816-34671135,34671261-34671612,
34671691-34671906
Length = 1170
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +2
Query: 236 KRCYVSISEQRAARPPRQSREIRNPQVYCGIRAPGICAQRRKSPANGTRLPQLPRAETAR 415
+R S S ++ P + + R +++ + QR TR L RA AR
Sbjct: 381 RRAVASSSRPGSSVEPMEQQYSRTSRLFSSSGSRPSSTQRVNPSVGETRATSLSRAAVAR 440
Query: 416 GITEESAHRS 445
G +E HRS
Sbjct: 441 GSRDEPLHRS 450
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 327 YEHLESVLRDEKAQQTELDCLNYLAQKQLVELLKKVPTEADELAMI 464
+ H + +L +Q + CL Y K +VEL +V + ++L I
Sbjct: 1730 FPHSDGILLSSPEEQNVVSCLEYAILKNIVELSSEVQSHLNQLKPI 1775
>11_01_0470 + 3645010-3647686,3647804-3648168
Length = 1013
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 432 VPTEADELAMIENAWQQTSS-YGE-PASLGKQEILPLFNSDNKRVREEIP 575
+P+ ++M+E + +++ YG P+SLGK +L + + N + IP
Sbjct: 431 IPSSLANISMLEELFLESNQLYGYIPSSLGKLNVLSVLSMSNNSLHGSIP 480
>08_01_0998 - 10136050-10138356
Length = 768
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 432 VPTEADELAMIEN---AWQQTSSYGEPASLGKQEILPLFNSDNKRVREEIPSIY*LREMT 602
+P E L ++E+ +W + S P+S+ L N N + EIPS Y LR +
Sbjct: 613 IPKEIGNLKILESLDFSWNELSG-SIPSSISNLMSLSSLNLSNNHLSGEIPSGYQLRTLA 671
Query: 603 STFHWNRTIG 632
++ G
Sbjct: 672 DPSIYSNNFG 681
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Frame = +2
Query: 119 CRERFKS*RRCAASRRDLKEH------PNSRH-RPSSCPYSPMN*RKRCYVSISEQRAAR 277
C ER R C S R+L+ P+ R R S YS R R Y + +
Sbjct: 129 CGERGHIERNCQNSPRNLRRERSYSCSPSPRRGRGRSRSYSRSRSRSRSYSRSRSRSLSG 188
Query: 278 PPRQSREIRNPQVYCGIRAP-----GICAQRRKSPA-NGTRLPQLPRAETA 412
PR RE+ + R+P ++++SP +G+R P+ P+ + +
Sbjct: 189 SPRARRELERSRSLSYSRSPRRSISPAANEKKRSPTPDGSRSPRSPQDQVS 239
>03_03_0062 +
14170303-14170637,14171799-14172029,14172224-14172326,
14173284-14173513,14174258-14174456
Length = 365
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 291 DCLGGRAALCSLIDT*QRFLQFIGEYGQLLGLWRELGCSLRSLLD 157
DC G C+ + + L+ E LG W E CS+ SL D
Sbjct: 81 DCPGKHCGTCAGLGHQESSLRCALEEALFLGRWEENSCSMDSLYD 125
>08_01_0378 +
3360215-3360253,3360326-3360437,3362176-3362213,
3363949-3363966,3364629-3364847,3364937-3366727,
3367764-3367827,3367915-3367975,3368685-3368694
Length = 783
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +3
Query: 357 EKAQQTELDCLNYLAQKQLVELLKKVPTEADELAMIENAWQQTSSYGEPASLGKQEILPL 536
++AQ+ ++DC AQK+L E K+ EA + +I ++ S GE + + +I P
Sbjct: 463 QRAQEKDIDCPMDNAQKELQETRKQDNFEA--MKVIVSSETDESGKGEVSLHTELKISPA 520
Query: 537 FNSDNK 554
+D K
Sbjct: 521 DKADTK 526
>06_03_1369 +
29620958-29621030,29622421-29622452,29622538-29622598,
29622695-29622711,29622916-29623250,29623329-29623686,
29623784-29624371,29624664-29624939
Length = 579
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +3
Query: 372 TELDCLNYLAQKQLVELLKKV-PTEADE--LAMIENAWQQTSSYGEPASLGKQEILPLFN 542
TE D L L ++ + KK+ P + D+ L +ENA + S + A LGK I N
Sbjct: 53 TEEDGLQLLKLRERTRIKKKIEPVQQDDEALVKLENAGIERSKAVDSAVLGKYSIWRREN 112
Query: 543 SDNK 554
+ K
Sbjct: 113 ENEK 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,628,525
Number of Sequences: 37544
Number of extensions: 412937
Number of successful extensions: 1258
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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