Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0474.Seq
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q226H1 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_Q4A5U2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q59QS0 Cluster: Possible transmembrane protein; n=1; Ca...    33   6.7  
UniRef50_Q8TLX5 Cluster: Predicted protein; n=1; Methanosarcina ...    33   6.7  
UniRef50_Q8ZT51 Cluster: Preprotein translocase secY subunit; n=...    33   8.8  

>UniRef50_Q226H1 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 411

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 16/26 (61%), Positives = 19/26 (73%)
 Frame = -1

Query: 79  NYIADSFNTFTPLYNFYLYISYKTIS 2
           NY+ D+ NT TP+ NFY  ISYK IS
Sbjct: 306 NYMKDNINTVTPINNFYT-ISYKQIS 330


>UniRef50_Q4A5U2 Cluster: Putative uncharacterized protein; n=1;
           Mycoplasma synoviae 53|Rep: Putative uncharacterized
           protein - Mycoplasma synoviae (strain 53)
          Length = 483

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = -3

Query: 473 FLLFHLSNFITPYLPLAPARTRQLVFTIS------LFVTYVSVLPFITLSHALIIIFCFE 312
           FL+  L++ I  +  L   +T++L+F I       +FV  +S++   +LS   + IF  +
Sbjct: 266 FLMLFLASIIFAFYALFKTKTKELIFKIENNNELIIFVLVISLIILSSLSFIFLTIFLQK 325

Query: 311 WF 306
           WF
Sbjct: 326 WF 327


>UniRef50_Q59QS0 Cluster: Possible transmembrane protein; n=1;
           Candida albicans|Rep: Possible transmembrane protein -
           Candida albicans (Yeast)
          Length = 1093

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 470 LLFHLSNFITPYLPLAPARTRQLVFTISLFVTYVSVLPFITLSHALI-IIFCFEWFYF 300
           L+F ++ F+T  L +A  R  +L  T  L+V Y  +     L H ++ I+FC + FY+
Sbjct: 729 LMFPVARFLTAVLCIAFIRDLELSVTSKLYVAYAQL-----LIHTIVGILFCIQLFYW 781


>UniRef50_Q8TLX5 Cluster: Predicted protein; n=1; Methanosarcina
           acetivorans|Rep: Predicted protein - Methanosarcina
           acetivorans
          Length = 127

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 392 ISLFVTYVSVLPFITLSHALIIIFCFEWFYFH*IHYILVAK 270
           +SLF +++S L F T S  LI +F    ++   IH+ L+ K
Sbjct: 28  LSLFYSFLSFLFFFTFSFLLIFVFSIFLYFLFFIHFCLLGK 68


>UniRef50_Q8ZT51 Cluster: Preprotein translocase secY subunit; n=4;
           Pyrobaculum|Rep: Preprotein translocase secY subunit -
           Pyrobaculum aerophilum
          Length = 459

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 434 LPLAPARTRQLVFTISLFVTYVSVLPFITLSHALIII 324
           +P+   + R + FTI L   YVSVLP I  +++L+++
Sbjct: 271 IPVTAGQYRGIKFTIPLRFVYVSVLPIIFTTYSLLLV 307


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,465,637
Number of Sequences: 1657284
Number of extensions: 9373280
Number of successful extensions: 18529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18524
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)