Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0474.Seq
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.4  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   5.5  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   5.5  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   5.5  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.6  

>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 108 APHHLQNPILQT*PS 152
           AP HLQ+P  QT PS
Sbjct: 82  APTHLQSPNTQTHPS 96


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 365 VLPFITLSHALIIIF 321
           VL FITL H  I +F
Sbjct: 215 VLQFITLQHTFIWVF 229


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 365 VLPFITLSHALIIIF 321
           VL FITL H  I +F
Sbjct: 215 VLQFITLQHTFIWVF 229


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 365 VLPFITLSHALIIIF 321
           VL FITL H  I +F
Sbjct: 215 VLQFITLQHTFIWVF 229


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = -2

Query: 192 ILPYKFWSGPITCWMVTFEGLGSVGDEGLI*KHN 91
           I P K W   +  +    EG        ++ KHN
Sbjct: 80  ITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHN 113


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = -2

Query: 192 ILPYKFWSGPITCWMVTFEGLGSVGDEGLI*KHN 91
           I P K W   +  +    EG        ++ KHN
Sbjct: 80  ITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHN 113


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 677 FKNGIPLKVXKVSXDQISNWLTGYHWSNXHSIXN 576
           F+NG  L+  K   D+    +   H S  HS+ N
Sbjct: 224 FENGCYLRRQKRFKDEKKELIRQTHKSPSHSVDN 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,145
Number of Sequences: 336
Number of extensions: 2745
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)