Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0474.Seq
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   1.9  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    26   4.5  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   4.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.9  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   7.8  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    25   7.8  

>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 500 HLSNSTNSPFLLFHLSNFITPYLPLAPAR-TRQLVFTISLFVTYV 369
           +L+N T + FLL H+S F+   + L P   T++ + ++S F+  +
Sbjct: 395 NLNNITATSFLLMHVSLFLGSPMNLQPVEPTQEDIASVSRFIATI 439


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -3

Query: 512 NSLIHLSNSTNSPFLLFHLSNFITPYLPLAPARTRQLVFTISLFVTYVSVLPFITLSHAL 333
           N L+H  +   S      + N++   +PL    T  +VF +SL+ ++V  + ++ L  A 
Sbjct: 337 NQLVHARSEEESLSARDIIMNYLL--IPLKMLATEPIVFLVSLYCSFVYAIIYLLL-EAY 393

Query: 332 IIIF 321
            +IF
Sbjct: 394 PVIF 397


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 491 NSTNSPFLLFHLSNFITPYLPLAPAR 414
           + T +PF  FH +  + P  PL+P R
Sbjct: 63  DGTYNPFPKFHFAGSLKPVYPLSPIR 88


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 473 FLLFHLSNFITPYLPLAPARTRQLVFTISLFVTYVSVLPFITLSH 339
           F +  +SN +T +  +A A    +   + +   YVS LP +T  H
Sbjct: 299 FFVSFISNNVTKWRCMAVALEFPITLFLWMLAVYVSFLPIMTRRH 343


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 410  RQLVFTISLFVTYVSVLP-FITLSHALIIIFCFEWFYFH*IHYILVAKKNFYKSFVSMVM 234
            R+   +I  F++ V V   FI+L  +    F F W  FH +  +++  +N  + F S++M
Sbjct: 3713 RRYKLSIKSFLSVVVVFQHFISLKKSYSFSFNFIWSTFHQMLNVVLENRN--QDFKSLIM 3770


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 311  WFYFH*IHYILVAKKNFYKSFVS 243
            W++   I Y+ + ++NF+ SFVS
Sbjct: 1011 WYHHRNIDYVDLLEQNFFLSFVS 1033


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 503 IHLSNSTNSPFLLFHLSNFITPYLPLAPARTRQLVFTISL 384
           IH    + + FL+ + ++ +TPYLP+  AR  Q  + +S+
Sbjct: 355 IHDGRFSENSFLIGNHADELTPYLPIL-ARLNQKCYFMSI 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,078
Number of Sequences: 5004
Number of extensions: 43575
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)