Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0474.Seq
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0197 + 6596197-6596402,6596766-6596828,6599679-6599795,660...    28   8.1  

>10_02_0197 +
           6596197-6596402,6596766-6596828,6599679-6599795,
           6600311-6600545,6600771-6600929,6601159-6601310,
           6602511-6602571
          Length = 330

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 207 SKL**ILPYKFWSGPITCWMVTFE 136
           SK+  + PYK+WS  ITC +  F+
Sbjct: 208 SKVLKVYPYKYWSSMITCLVGGFQ 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,100,211
Number of Sequences: 37544
Number of extensions: 224643
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)