SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0472.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...   119   3e-28
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    82   6e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    69   6e-13
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    67   2e-12
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    66   3e-12
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    62   7e-11
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    57   2e-09
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    52   1e-07
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    30   0.28 
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.0  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   7.9  

>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score =  119 bits (287), Expect = 3e-28
 Identities = 55/80 (68%), Positives = 67/80 (83%)
 Frame = +2

Query: 17  QPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDG 196
           Q  +++L+EGTD +QG+ QL+SNINAC  V D +RTTLGP G DKL+VD  G+ VISNDG
Sbjct: 7   QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66

Query: 197 ATIMKLLDIIHPAAKTLVDM 256
           ATIMKLLDI+HPAAKTLVD+
Sbjct: 67  ATIMKLLDIVHPAAKTLVDI 86



 Score =  101 bits (242), Expect = 1e-22
 Identities = 57/127 (44%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
 Frame = +1

Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
           A++QDAEVGDGTTSVV+ AGE+L+  + FVE+GV   ++IR  R A++LA+ KIKE A+ 
Sbjct: 87  ARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAIH 146

Query: 436 IDISR*RNQRDLLLKCASTAMSFEMIHQPEGITSLKICC*MLSCLWTFHFXPL-RT*FGI 612
           +D+S     RDLL KCASTAM+ ++I       +  +    +  + T     L     GI
Sbjct: 147 LDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMV----VDAVLTLDQEDLNENMIGI 202

Query: 613 KKVXGGS 633
           KKV GG+
Sbjct: 203 KKVPGGA 209



 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 590 LFEHDLESRRXPVGALEDSFPGFPEXAFKKTFSYVG 697
           L E+ +  ++ P GA+EDS       AFKKTFSY G
Sbjct: 195 LNENMIGIKKVPGGAMEDSLL-VKGVAFKKTFSYAG 229


>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 39/72 (54%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
 Frame = +2

Query: 53  QTQGKPQLV--SNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDII 226
           Q + KPQ V  SNI A + V DA+RT+LGP+GMDK+I    G+ +++NDGATI+K L ++
Sbjct: 12  QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVL 71

Query: 227 HPAAKTLVDMQS 262
           HPAAK LVD+ +
Sbjct: 72  HPAAKMLVDLSA 83



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 32/86 (37%), Positives = 58/86 (67%)
 Frame = +1

Query: 262 SQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVKID 441
           +QD E GDGTTSVVILAG +L   +  +++G+HP V+  + + A+   ++ +KE A+ I+
Sbjct: 84  AQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE 143

Query: 442 ISR*RNQRDLLLKCASTAMSFEMIHQ 519
           +S     R+ LL+ A+T+++ +++ Q
Sbjct: 144 LS----DRESLLRAATTSLNSKIVSQ 165


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 28/81 (34%), Positives = 52/81 (64%)
 Frame = +2

Query: 14  MQPQILLLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISND 193
           MQ  + ++    ++  G    +SNI A + V D +RT LGPR M K+++D  G  +++ND
Sbjct: 1   MQSPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTND 60

Query: 194 GATIMKLLDIIHPAAKTLVDM 256
           G  I++ +++ HPAAK+++++
Sbjct: 61  GHAILREIEVAHPAAKSMIEL 81



 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 32/81 (39%), Positives = 48/81 (59%)
 Frame = +1

Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
           A++QD EVGDGTTSV+ILAGEIL    P ++  +HP V+IR+ + A   A+  I E  + 
Sbjct: 82  ARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLP 141

Query: 436 IDISR*RNQRDLLLKCASTAM 498
           +++        L+  C  T +
Sbjct: 142 VNVDDNAEMFRLIRTCIGTKL 162


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = +2

Query: 32  LLREGTDQTQG-KPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIM 208
           L REG    QG +  ++ N NA + + +  RT+LGP G +K++V+H  +  ++ND ATI+
Sbjct: 13  LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72

Query: 209 KLLDIIHPAAKTLVD 253
           + L++IHPAAK +VD
Sbjct: 73  RELEVIHPAAKLVVD 87



 Score = 31.9 bits (69), Expect = 0.091
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +1

Query: 259 KSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKE 423
           + Q+ E+GD    VV+  GE+L + +  +  G+ P  + +    A    +E ++E
Sbjct: 90  QQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEE 144


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 66.5 bits (155), Expect = 3e-12
 Identities = 28/69 (40%), Positives = 46/69 (66%)
 Frame = +2

Query: 50  DQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDIIH 229
           ++  G+     N+ A   + + V+++LGP G+DK++VD  G   ++NDGATI+ LLD+ H
Sbjct: 15  EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74

Query: 230 PAAKTLVDM 256
           PA K LV++
Sbjct: 75  PAGKVLVEL 83



 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 34/86 (39%), Positives = 49/86 (56%)
 Frame = +1

Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
           A+ QD EVGDGTTSVVI+A E+L+R    V+  +HP  +I   R A R   E +K     
Sbjct: 84  AQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIR---EAVKFMTDV 140

Query: 436 IDISR*RNQRDLLLKCASTAMSFEMI 513
           +  S     ++ L+  A T+MS ++I
Sbjct: 141 LSCSVDSLGKESLINVAKTSMSSKII 166


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 28/73 (38%), Positives = 48/73 (65%)
 Frame = +2

Query: 38  REGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLL 217
           +E   +  G   + S+I A + V + VRT+LGPRG+DK+++  +G+  ++NDGATI+  +
Sbjct: 24  QEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQM 83

Query: 218 DIIHPAAKTLVDM 256
           ++ H  AK LV +
Sbjct: 84  EVEHQIAKLLVQL 96



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 27/86 (31%), Positives = 53/86 (61%)
 Frame = +1

Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
           +KSQD E+GDGTT VV+LAG +L++ +  +++G+HP  +      A ++A++ +   +  
Sbjct: 97  SKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDV 156

Query: 436 IDISR*RNQRDLLLKCASTAMSFEMI 513
           +D S   N  + L + A T++  +++
Sbjct: 157 VDFSP-ENTTN-LFRSAKTSLGSKVV 180


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
 Frame = +2

Query: 32  LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDH-NGKAVISNDGATIM 208
           +  E   Q +G+   +S+      V D V++TLGP+GMDK++  + +G  V++NDGATI+
Sbjct: 8   IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67

Query: 209 KLLDIIHPAAKTLVDMQSLK 268
           K + + + AAK LV++  ++
Sbjct: 68  KSIALDNAAAKVLVNISKVQ 87



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 31/88 (35%), Positives = 52/88 (59%)
 Frame = +1

Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
           +K QD EVGDGTTSV + A E+L++ +  V   +HP+V+I   R A++ AI+ ++  ++ 
Sbjct: 84  SKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSID 143

Query: 436 IDISR*RNQRDLLLKCASTAMSFEMIHQ 519
            + S     R  L   A T +S +++ Q
Sbjct: 144 -NSSDPAKFRSDLENIARTTLSSKILSQ 170


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 27/82 (32%), Positives = 45/82 (54%)
 Frame = +1

Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
           A +QD   GDGTTSV +L GE+LK+ + ++ EG+HP ++      A   A+  +      
Sbjct: 79  ATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTD 138

Query: 436 IDISR*RNQRDLLLKCASTAMS 501
            ++      R++LL  A T++S
Sbjct: 139 FEV-----DREVLLNVAKTSLS 155



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 32  LLREGTDQTQGKPQLVSNINACQLVVDAVRTTLGPRGMDKLIVDHNGKAVISNDGATIMK 211
           LL    +  Q    L  NI+A   + D +++ LGP G  K++VD  G   ++ DG  ++ 
Sbjct: 4   LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLT 63

Query: 212 LLDIIHPAAKTL 247
            + I +P A  +
Sbjct: 64  EMQIQNPTASCI 75


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 113 AVRTTLGPRGMDKLIVDHNGKAVISNDGATIMKLLDI 223
           AV  TLGP+G + LI    G   I+ DG T+ + + +
Sbjct: 57  AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSL 93



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +1

Query: 256 AKSQDAEVGDGTTSVVILAGEILKRLKPFVEEGVHPRVLIRAVRTASRLAIEKIKEQAVK 435
           A   +   GDGTT+  +L   I       V  G +P  L R ++ A    +E +  QA K
Sbjct: 109 ASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFL--QANK 166

Query: 436 IDIS 447
            DI+
Sbjct: 167 RDIT 170


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 445 SR*RNQRDLLLKCASTAMSFEMIHQPEGITSLK 543
           SR  +Q D+L +  ST  S   +H+ E I++LK
Sbjct: 110 SRWDSQTDILSQIESTKASLAEVHKAEEISNLK 142


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 169 IVIYNQLVHTTGTQGGSDRIDNKL 98
           ++I+N LVH T T+  S+ + N L
Sbjct: 503 LIIFNNLVHETDTETDSETLLNDL 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,138
Number of Sequences: 5004
Number of extensions: 60589
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -