Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0471.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    83   4e-17
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    30   0.37 
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    27   2.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.5  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 3/86 (3%)
 Frame = -3

Query: 672 GMDMDTTSIFTSATIIMAVPTGIKIFGGLATIQELKLI---IPXIFYED*VWYFIHSRGL 502
           G+D+DT + F++AT+++A+PTGIKIF  LAT+    +    +P ++    +  F    GL
Sbjct: 302 GLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIG-GL 360

Query: 501 TGVILANSSMDITLHDTYYVVAHFHY 424
           TGVIL+NS +DI  HDTY+VVAHFHY
Sbjct: 361 TGVILSNSVLDIAFHDTYFVVAHFHY 386



 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 26/52 (50%), Positives = 32/52 (61%)
 Frame = -2

Query: 409 GAVFAIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAG 254
           GA+F + G +    P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G
Sbjct: 391 GALFGLCGAYYW-SPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNG 441


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -2

Query: 448 LCSSSFSLWFYQ*GAVFAIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHF 269
           L  +++  WF     V    G  I  +P   G+++   ILK+ F   F    + FF  HF
Sbjct: 116 LLLATYETWFRSIKEVIVACGAGIRSFPQKRGVNMLYAILKLTFVNAFAIPLLMFFRSHF 175


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 365 FIYRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWIPRRYSDYP 228
           F YRP+I+    K +  +        + S TF+  +++ +R  +YP
Sbjct: 18  FYYRPWIRIENIKPTPLWKPITFAVGVGSATFYTANYLDKRRKNYP 63


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 576  QELKLIIPXIFYED*VWYFIHSRGLT 499
            QE+ L  P +F  D V+  + SRGLT
Sbjct: 4711 QEITLFFPKLFSLDTVYSSVRSRGLT 4736


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 166 TDNREIYEPNEEIIFHEIYESG*SEYRRGIQLNLKNVVEKMLYLLQ 303
           T NRE+ E NEEI+   +     S   R  +L+L+N +  +L  L+
Sbjct: 452 TTNREVEEENEEILL-VLLNIISSVIGRNAELDLENPISSLLPALE 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,571
Number of Sequences: 5004
Number of extensions: 46227
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)