Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0471.Seq
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 93 1e-19
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 8.4
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 93.5 bits (222), Expect = 1e-19
Identities = 47/84 (55%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Frame = -3
Query: 669 MDMDTTSIFTSATIIMAVPTGIKIFGGLATIQ--ELKLIIPXIFYED*VWYFIHSRGLTG 496
M++DT + FT+AT+I+AVPTGIK+F LAT+ ++L P ++ V+ F GLTG
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIG-GLTG 59
Query: 495 VILANSSMDITLHDTYYVVAHFHY 424
VILANSS+D+ +HDTYYVVAHFHY
Sbjct: 60 VILANSSLDVVMHDTYYVVAHFHY 83
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/53 (60%), Positives = 36/53 (67%)
Frame = -2
Query: 409 GAVFAIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGY 251
GAVFAI GF + TG N KI F+ +FIGVNITFFPQHFLGLAG+
Sbjct: 88 GAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGF 140
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 89 SIE*YQNLPPAEHSYNELPIL 27
S+E Q PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/53 (60%), Positives = 36/53 (67%)
Frame = -2
Query: 409 GAVFAIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGY 251
GAVFAI GF + TG N KI F+ +FIGVNITFFPQHFLGLAG+
Sbjct: 2 GAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGF 54
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 89 SIE*YQNLPPAEHSYNELPIL 27
S+E Q PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 89 SIE*YQNLPPAEHSYNELPIL 27
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 89 SIE*YQNLPPAEHSYNELPIL 27
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 89 SIE*YQNLPPAEHSYNELPIL 27
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 89 SIE*YQNLPPAEHSYNELPIL 27
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 89 SIE*YQNLPPAEHSYNELPIL 27
S+E Q PPA H+YNELP +
Sbjct: 67 SLEWVQQSPPALHTYNELPFV 87
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 371 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWIPRR 243
+ FIY + FL +KN F+ YW+ YN F W +R
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRTQR 58
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 100 ISHHQLNDIKIYHQQNIHIMNYQF 29
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,249,495
Number of Sequences: 59808
Number of extensions: 290877
Number of successful extensions: 622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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