Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0471.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    30   1.3  
At3g58410.1 68416.m06510 meprin and TRAF homology domain-contain...    29   3.9  

>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 685 YPPVGYGYGYHEHIYFS 635
           YPP G+GYG+H H Y S
Sbjct: 25  YPPHGHGYGHHGHGYGS 41


>At3g58410.1 68416.m06510 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 328

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 296 YSNKYCKKLNF*YIRI**KACK*RISVNKSPNNCKYCSLLIE 421
           +S+  CKK      +I    CK R+S+    NNC Y SL +E
Sbjct: 37  FSSLQCKKFYSVPFQI--GDCKWRLSIYPKGNNCDYLSLFLE 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,478,537
Number of Sequences: 28952
Number of extensions: 215843
Number of successful extensions: 368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)