Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0469.Seq
(439 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 1.3
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 27 1.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 2.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 3.9
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.7
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 24 8.9
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 24 8.9
SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 8.9
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 125 QVAHPARKRHTIEQSLTTCSLQFLLKADVHSHL 27
++AHP H + QSL +C L LL ++ +
Sbjct: 188 EIAHPPSYDHRLHQSLLSCFLVVLLSNTLYDSI 220
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 62 GANTLL-GFAQSCVFYEPDALPGVLEQIHAHIVPPHKLLLGNGLLQ 196
GA T+ GF S + + L + + A ++P H L LG+GL+Q
Sbjct: 237 GAGTVFKGFLPSSTVFSREGLYSSIGILGATVMP-HSLFLGSGLVQ 281
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 2.2
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 71 TLLGFAQSCVFYEPDALPGVLEQIHAHIVPPHKLLLGNGLLQQIVEEVQEG 223
TLL C Y DAL +L+ H + P L L +L+ + E G
Sbjct: 1564 TLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIPILKYGLRERNAG 1614
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 3.9
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -2
Query: 228 VPPS*TSSTICCRRPLPNNSLWGGTMCACICSSTPGSASGS*KT 97
+PP+ TSST PLP S T C S P S S T
Sbjct: 150 IPPTSTSSTDTNSNPLPTTS----TSCTTSTSIPPTGGSSSLST 189
Score = 24.6 bits (51), Expect = 6.7
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = -2
Query: 228 VPPS*TSSTICCRRPLPNNSLWGGTMCACICSSTPGSASGS*KTHD*AKPNNVFA----P 61
+PP+ TSST PLP S T C S P S + T P + + P
Sbjct: 263 IPPTSTSSTDTNSSPLPTTS----TSCTTSTSIPPTGNSTTPVTPT-VPPTSTSSTSTPP 317
Query: 60 IPLEGRRTLSSVCPLPAT 7
P T +S PLP+T
Sbjct: 318 PPASTSSTGTSSSPLPST 335
Score = 24.2 bits (50), Expect = 8.9
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = -2
Query: 228 VPPS*TSSTICCRRPLPNNSLWGGTMCACICS-STPGSASGS*KTHD*AKPNNVFA---P 61
+PP+ TSST PLP S T C S T GS+S S P + + P
Sbjct: 207 IPPTSTSSTDTNSSPLPTTS----TSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIP 262
Query: 60 I-PLEGRRTLSSVCPLPAT 7
I P T ++ PLP T
Sbjct: 263 IPPTSTSSTDTNSSPLPTT 281
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 6.7
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +2
Query: 116 ALPGVLEQIHAHIVPPHKLLL-----GNGLLQQIVE 208
A P +EQ+ HIV PH L L GN +LQ ++E
Sbjct: 513 ASPAQIEQLVEHIV-PHALTLVQDAFGNYVLQYVLE 547
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 24.2 bits (50), Expect = 8.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 15 AVDRQMRVYVGLQEELE-RTRC*ALLNRVSFTSRMRYLACWSRYTRTLFHPISYC 176
A+ RQ + V LQ + R+ A+LN + T Y +S YT L H C
Sbjct: 85 ALFRQNILPVLLQSPMSTRSHLMAILNIILSTDFPEYWPGFSEYTSNLVHSTERC 139
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 24.2 bits (50), Expect = 8.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 289 LGCCKCRRAIDAVHVQSVQMRASLLN 212
L CC C RAI+ VQ ++ L+
Sbjct: 125 LKCCGCNRAINVFDVQDQDSASATLS 150
>SPAC18G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 24.2 bits (50), Expect = 8.9
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +1
Query: 73 VVRLCSIVCLLRAGCATWR 129
V LC + + GCA WR
Sbjct: 30 VADLCHAIWMFNGGCADWR 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,815
Number of Sequences: 5004
Number of extensions: 36806
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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