Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0469.Seq
(439 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744... 31 0.31
07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725 31 0.40
06_01_0021 - 214401-214613,214707-214790,214887-215041,215165-21... 30 0.93
05_04_0087 + 17807088-17807183,17807286-17807444,17808718-178089... 29 2.2
11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219 28 2.9
07_01_0886 - 7356591-7356662,7357002-7357079,7357373-7357444,735... 28 3.8
07_01_0695 + 5251802-5253016 28 3.8
06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507 28 3.8
03_03_0135 + 14748712-14748718,14748807-14748873,14748962-147490... 28 3.8
08_02_0588 + 19036509-19039235 27 5.0
02_04_0148 - 20198407-20201424 27 6.6
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 27 6.6
08_02_0527 + 18212938-18213257,18213352-18213991 27 8.7
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 27 8.7
>07_01_0890 -
7437901-7439339,7439452-7439657,7439841-7440171,
7440268-7440405,7440619-7440874,7440963-7441318,
7441421-7441709
Length = 1004
Score = 31.5 bits (68), Expect = 0.31
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 32 ESVRR-PSRGIGANTLLGFAQSCVFYEPDALPGVLEQIHAHIVPPHKLLLGNGL 190
E++R S GI + L G + + + L GV+E++H+ ++P K+ L +GL
Sbjct: 563 EAIRELGSLGIKSVMLTGDSSAAATHAQGQLGGVMEELHSELLPEDKVRLVSGL 616
>07_03_1149 - 24366416-24366470,24366586-24367751,24368375-24368725
Length = 523
Score = 31.1 bits (67), Expect = 0.40
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 100 LLRAGCATWRAGADTRAHCSTP*AIVRQWPSA---ANRRGSSGGR 225
L+R GC R+H STP A++R +A A+ RG SGGR
Sbjct: 14 LIRLGCGRLLPAGHARSHGSTP-ALIRAAAAASSPASPRGHSGGR 57
>06_01_0021 -
214401-214613,214707-214790,214887-215041,215165-215234,
215334-215509,215631-215803,216715-216938
Length = 364
Score = 29.9 bits (64), Expect = 0.93
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 262 LLYDIYNTLALAQMEGSAPMHFSSMLVTLYGPGDFSQEATLTRERYGQPS 411
L+Y IY A + G A +H +T +GP + EAT++R +PS
Sbjct: 260 LIYGIYEAKADGFLPGGASLH---SCMTPHGPDTKTYEATISRPDANEPS 306
>05_04_0087 +
17807088-17807183,17807286-17807444,17808718-17808969,
17809514-17809729,17809962-17809993,17810198-17810293,
17811435-17811544,17811607-17811757,17812099-17812201
Length = 404
Score = 28.7 bits (61), Expect = 2.2
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 94 VCLLRAGCA-TWRAGADTRAHCSTP*AIVRQWPSAANRRGSSGG 222
VC L GC+ +WR D A C R+WP AA G GG
Sbjct: 36 VCAL-GGCSRSWRRACD--ADCVWEALFRRRWPLAAAAGGGGGG 76
>11_01_0679 - 5550070-5550201,5550309-5550454,5550577-5551219
Length = 306
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 187 PSAANRRGSSGGRHAFVHFAHVPHQLLYDIYNTL 288
P A RRG R + H+P ++L+DI L
Sbjct: 4 PGEAGRRGKGAARPSDDRIGHLPDEVLHDIIGLL 37
>07_01_0886 -
7356591-7356662,7357002-7357079,7357373-7357444,
7357511-7357600,7357669-7357783,7358509-7358639,
7358717-7358992,7360147-7360283,7360368-7360502,
7360958-7361325,7362111-7362229,7362295-7362339
Length = 545
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 207 RKFRREARICTLCTCTASIALRHLQHPSPRPD 302
R+ R R+CT C T + + R P P PD
Sbjct: 35 RRIPRSRRLCTGCITTTASSSRRSSVPLPLPD 66
>07_01_0695 + 5251802-5253016
Length = 404
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 94 VCLLRAGCATWRAGADTRA 150
VC LRA C +WRA A RA
Sbjct: 41 VCRLRAVCRSWRAVASDRA 59
>06_03_1495 + 30566992-30567084,30567181-30567235,30567320-30567507
Length = 111
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +1
Query: 37 CTSAFKRNWSEHVVRLCSIVCLLRAGCATWRAGADTRAHC 156
C+ NW + + VC R C +G DTR C
Sbjct: 55 CSGRCANNWKKEMCNKMCNVCCNRCNCVPPGSGQDTRHLC 94
>03_03_0135 +
14748712-14748718,14748807-14748873,14748962-14749076,
14749179-14749382,14749614-14749742,14749822-14749989,
14750648-14750808,14751490-14751580,14752277-14752436,
14752782-14752815,14753122-14753211,14754780-14754893,
14755000-14755123,14755652-14755762,14756378-14756478,
14756571-14756703
Length = 602
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 248 CAKCTNACLPPELPRRFAAEGHCLTIAYG 162
C T AC+P L RR+ + H L + G
Sbjct: 252 CGHTTEACVPSALARRYQQDIHLLLLQQG 280
>08_02_0588 + 19036509-19039235
Length = 908
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 106 RAGCATWRAGADTRAHCST-P*AIVRQWPSAANRRGSSGGR 225
R+G A W G D RA + P R+ +AA RG G R
Sbjct: 55 RSGWAEWGGGGDARAGAAALPSRCPRRPVAAAGGRGEGGDR 95
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 173 LLGNGLLQQIVEEVQEGGTHLYTLHMY 253
+LGN + + EE+QEG T L+T+H Y
Sbjct: 886 VLGNCRARVLKEEMQEG-TSLFTVHAY 911
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 27.1 bits (57), Expect = 6.6
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = -3
Query: 254 GTCAKCTNACLPPELPRRFAAEGHCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSLT 75
G KC ACL P RR A + G+E R++A A + A++R +SL
Sbjct: 91 GLREKCA-ACLAPAASRRGAGHAVLANLELGIESIERLAADA--ASAQAQQRDAKIRSLR 147
Query: 74 TCSLQFLLKADVHS 33
+ A +H+
Sbjct: 148 NSIRLLSVVASLHA 161
>08_02_0527 + 18212938-18213257,18213352-18213991
Length = 319
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 80 GFAQSCVFYEPDALPGVLEQIHAHIVPPHKLLLGNGLLQQIV 205
G V E + G+L Q+ AH+ P + L GL+ QIV
Sbjct: 7 GSGAQLVVAELVRVQGLLRQLEAHLSAPCSVELCRGLVAQIV 48
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 188 GHCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSLTTCSL 63
G L++ G+ +CA A +PAR R+ I S T ++
Sbjct: 90 GELLSVPVGLSRCACPLCGAELAVYPARLRNYILSSAATAAV 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,978,198
Number of Sequences: 37544
Number of extensions: 311614
Number of successful extensions: 954
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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