Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0469.Seq
         (439 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)               27   5.1  
SB_34381| Best HMM Match : Flagellin_IN (HMM E-Value=5.7)              27   5.1  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      27   6.8  
SB_36814| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-21)           27   6.8  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   6.8  
SB_45128| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 194 AEGHCLTIAYGVE-QCARVSAPARQVAHPARKRHTIEQSLT 75
           + G  +T  Y VE +C   SA ARQ A P R    ++  L+
Sbjct: 218 SSGSPITTIYAVENRCENYSAQARQCAEPTRYHPVLQSQLS 258



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 194 AEGHCLTIAYGVE-QCARVSAPARQVAHPARKRHTIEQSLT 75
           + G  +T  Y VE +C   SA ARQ A P R    ++  L+
Sbjct: 281 SSGSPITTIYAVENRCENYSAQARQCAEPTRYHPVLQSQLS 321



 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 194 AEGHCLTIAYGVE-QCARVSAPARQVAHPARKRHTIEQSLT 75
           + G  +T  Y VE +C   SA ARQ A P R    ++  L+
Sbjct: 376 SSGSPITTIYAVENRCENYSAQARQCAEPTRYHSGLQSQLS 416


>SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 184 WPSAANRRGSSGGRHAFVHFAHVPHQLLYD 273
           WP +A +R S   RH++  +  +P Q++ D
Sbjct: 508 WPESAAKRNSQASRHSWARYG-IPDQVISD 536


>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 135 SSTPGSASGS*KTHD*AKPNNVFAPIPLEGRRTLSSVCPLPATL 4
           ++TP  A+   +T +  KP  + +P+ L  +RT     P+P+T+
Sbjct: 56  TTTPKKATS--ETMNFTKPAGILSPVVLSTQRTFLRTTPIPSTV 97


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 176  LGNGLLQQI--VEEVQEGGTHLYTLHMYRIN 262
            LG  L+Q+   ++E Q+G   L+TLH Y IN
Sbjct: 1721 LGVALMQECFGLQEFQDGYNILHTLHQYSIN 1751


>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
          Length = 245

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 69  FAPIPLEGRRTLSSVCPLPAT 7
           FAPIPL+G  T S V  +PA+
Sbjct: 206 FAPIPLQGTTTNSGVSGVPAS 226


>SB_34381| Best HMM Match : Flagellin_IN (HMM E-Value=5.7)
          Length = 156

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 85  CSIVCLLRAGCATWRAGADTRAHCSTP*AIVRQWPSAANRRGS 213
           CS++   +AGC     G    AH S   A++R    A+  RG+
Sbjct: 9   CSVLLNTKAGCVQHNGGPTYCAHQSRTDALLRAADKASTLRGA 51


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 262 IDAVHVQSVQMRASLLNFLDDLLQKA 185
           ++ +HV +V   A+LLN+L++ LQ A
Sbjct: 61  VNTMHVLAVNSVATLLNYLEEQLQNA 86


>SB_36814| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-21)
          Length = 436

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 402 SVTFSSQSRFL*EVSWSVQCDQHRREVHRSGALH 301
           SV   S + F+ E+  ++  + HRR+ H S A+H
Sbjct: 269 SVVAGSLASFVTEIIHALHKEYHRRKRHESAAMH 302


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 114  MRYLACWSRYTRTLFHPISYC*AMAFCSKSSRKFRREARICTLCTCTASIALRHL 278
            + YL+  +     LF  +SY    A C  +     R   +C +C    S++LR+L
Sbjct: 1828 LHYLSLCAVCILALFVSLSYLCLCAICIFALSVSLRYLYLCAICIFALSVSLRYL 1882


>SB_45128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 257 CG-TCAKCTNACLPPELPRRFAAEGHCLTIAYGVEQCARVSAPARQV 120
           CG  C++ T  C PP L  R     H    ++   + AR   P++Q+
Sbjct: 15  CGHVCSRLTKRCRPPALRLRDKPASHPPFASWRNSEEARTDRPSQQL 61


>SB_40462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1580

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
 Frame = +1

Query: 235  VHFAHVPHQLLYDIYNTLALAQMEGSAPMHFSSMLVT---LYGPGDFSQEATLTRERYGQ 405
            +  AH P Q  + + + L + QM    P+H  S  +T   L   G F+    L    Y  
Sbjct: 948  LELAHFPKQWSFTLPDVLGVLQMSSGNPLHEGSQPLTDISLSLSGSFASRGLLRSYSYAD 1007

Query: 406  PSTQAANVV 432
              +   N V
Sbjct: 1008 EDSFRNNPV 1016


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,467
Number of Sequences: 59808
Number of extensions: 339787
Number of successful extensions: 898
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)