Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0469.Seq
         (439 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    24   0.84 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   0.84 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   7.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   7.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 101 RHTIEQSLTTCSLQFL 54
           R+T E  LTTCS  FL
Sbjct: 196 RYTTEGFLTTCSFDFL 211


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 101 RHTIEQSLTTCSLQFL 54
           R+T E  LTTCS  FL
Sbjct: 196 RYTTEGFLTTCSFDFL 211


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 220 GRHAFVHFAHVPHQLL 267
           G+H++VH   VP++LL
Sbjct: 127 GKHSYVHTITVPNKLL 142


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 238  HFAHVPHQLLYDIYNTLALAQMEGSAPM 321
            H++ VP    +DI N   L+  +G+ PM
Sbjct: 1035 HYSVVPFVSNHDILNLRPLSMEKGTRPM 1062


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 273 HLQHPSPRPDGGLRSDALLVDAGHI 347
           H+ HP  +PDG  +  A+     H+
Sbjct: 22  HVYHPYRQPDGMNQCQAVNGHCSHL 46


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 273 HLQHPSPRPDGGLRSDALLVDAGHI 347
           H+ HP  +PDG  +  A+     H+
Sbjct: 22  HVYHPYRQPDGMNQCQAVNGHCSHL 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,130
Number of Sequences: 438
Number of extensions: 3123
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)