Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0469.Seq
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2...    29   1.0  
At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2...    29   1.0  
At1g23310.1 68414.m02915 glutamate:glyoxylate aminotransferase 1...    29   1.4  
At1g62030.1 68414.m06996 DC1 domain-containing protein contains ...    27   5.5  
At5g61360.1 68418.m07699 expressed protein                             27   7.3  
At5g46290.1 68418.m05698 3-oxoacyl-[acyl-carrier-protein] syntha...    27   7.3  
At1g62870.1 68414.m07099 expressed protein                             27   7.3  

>At1g70580.2 68414.m08128 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +1

Query: 208 GSSGGRHAFVHFAHVPHQLLYDIYNTLALAQMEGSAPMHFSSMLVTLYGPGDFSQEATLT 387
           G  G R  +    ++P + + +IY   ++A     +   F  ++V+   PGD S +    
Sbjct: 295 GECGQRGGYFEMTNIPPRTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYD-QFV 353

Query: 388 RERYG 402
           RE  G
Sbjct: 354 RESKG 358


>At1g70580.1 68414.m08127 glutamate:glyoxylate aminotransferase 2
           (GGT2) identical to glutamate:glyoxylate
           aminotransferase 2 [Arabidopsis thaliana] GI:24461829;
           similar to alanine aminotransferase from Panicum
           miliaceum [SP|P34106], GI:4730884 from Oryza sativa;
           contains Pfam profile PF00155: aminotransferase, classes
           I and II
          Length = 481

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +1

Query: 208 GSSGGRHAFVHFAHVPHQLLYDIYNTLALAQMEGSAPMHFSSMLVTLYGPGDFSQEATLT 387
           G  G R  +    ++P + + +IY   ++A     +   F  ++V+   PGD S +    
Sbjct: 295 GECGQRGGYFEMTNIPPRTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYD-QFV 353

Query: 388 RERYG 402
           RE  G
Sbjct: 354 RESKG 358


>At1g23310.1 68414.m02915 glutamate:glyoxylate aminotransferase 1
           (GGT1) identical to glutamate:glyoxylate
           aminotransferase 1 [Arabidopsis thaliana] GI:24461827;
           similar to alanine aminotransferase GI:4730884 from
           [Oryza sativa]; contains Pfam profile PF00155:
           aminotransferase, classes I and II
          Length = 481

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +1

Query: 208 GSSGGRHAFVHFAHVPHQLLYDIYNTLALAQMEGSAPMHFSSMLVTLYGPGDFSQEATLT 387
           G  G R  +    ++P +++ +IY   ++A     +   F  ++V    PGD S +    
Sbjct: 295 GECGQRGGYFEMTNLPPRVVEEIYKVASIALSPNVSAQIFMGLMVNPPKPGDISYD-QFA 353

Query: 388 RERYG 402
           RE  G
Sbjct: 354 RESKG 358


>At1g62030.1 68414.m06996 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 743

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = -3

Query: 257 CGTCAKCTN-ACLPPELPRRFAAEGHCLTIAYGVEQCARV--SAPARQVAHPARKRHTI- 90
           C   A C   A LP E+  R+  + H LT++YG E C          Q   P  + +T  
Sbjct: 580 CDYFALCFGCATLPQEV--RYEHDKHMLTLSYGEETCITTYWCDICEQEIDPKERFYTCG 637

Query: 89  EQSLTTCSLQFLLKADVH 36
           E    T  ++ LL  D++
Sbjct: 638 EYCCVTLHIECLLGQDLY 655


>At5g61360.1 68418.m07699 expressed protein 
          Length = 210

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/77 (22%), Positives = 32/77 (41%)
 Frame = +1

Query: 181 QWPSAANRRGSSGGRHAFVHFAHVPHQLLYDIYNTLALAQMEGSAPMHFSSMLVTLYGPG 360
           Q+P    R  +   +     F  + H+ LY   N L    +  S+    S +  + + P 
Sbjct: 20  QFPMVFVRESTCFAKDDLAIFPPINHENLY--VNGLESPSVSSSSSSSSSRLSDSSFSPS 77

Query: 361 DFSQEATLTRERYGQPS 411
           D  ++   +R+ + QPS
Sbjct: 78  DSDEQFQFSRKSHSQPS 94


>At5g46290.1 68418.m05698 3-oxoacyl-[acyl-carrier-protein] synthase
           I identical to Swiss-Prot:P52410
           3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast
           precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I)
           (KAS I) [Arabidopsis thaliana]
          Length = 473

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 188 GHCLTIAYGVEQCARVSAPARQVAHPARKRHTIEQSL 78
           GHCL  A G+E  A V A      HP+  +   EQ++
Sbjct: 399 GHCLGAAGGLEAIATVKAINTGWLHPSINQFNPEQAV 435


>At1g62870.1 68414.m07099 expressed protein
          Length = 796

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 187 PSAANRRGSSGGRHAFVHFAHVPHQLLYDIYNTLALAQMEGS 312
           PS+++R+ +S    A  H  H PH      YN   L+ ++ S
Sbjct: 127 PSSSHRKRNSSAVEALNHHHHHPHHHHQGSYNVTPLSVVDPS 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,384,240
Number of Sequences: 28952
Number of extensions: 212950
Number of successful extensions: 587
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)