Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0468.Seq
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.5  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    26   6.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   6.0  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 116 SLPGPGSKTPAPNTYSMPPVLGEAKEGSKRAAPAFSITGR 235
           S P P     AP+T   PP L  ++  S   AP  +I GR
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 295 AAAALTKRPPAFTMAPRRELKPPTAAVPGPGVYCP 399
           +A+A     PA    P+ EL+PPT+A P P +  P
Sbjct: 119 SASAAPPSAPA-PPTPQSELRPPTSAPPRPSIPPP 152


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 11   PPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPV 175
            PP   PT  P   + +  A +     PA S  +  S+P P    P P    +PPV
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIP-SIPAPSGAPPVPAPSGIPPV 1094


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 168 HRYLVKRKKGVKELHRLSVSQVV 236
           +++L   +KG +ELHR  +SQ++
Sbjct: 216 YQFLKDMRKGFRELHRKDLSQLI 238


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 89  PAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
           PA++ G R      GSKTPA N+ S  P
Sbjct: 828 PAWNTGSRTPAWNSGSKTPAWNSGSRTP 855


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 240 FPRPVILKAGAALLLPSFASPSTGGI 163
           FPR V+  AG  ++LP +  P   GI
Sbjct: 307 FPRMVVPSAGVHVVLPEYYCPPNIGI 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,717
Number of Sequences: 5004
Number of extensions: 64158
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)