Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0468.Seq
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 32 0.42
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 31 0.97
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.97
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 30 1.3
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 30 1.7
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 30 1.7
At5g38560.1 68418.m04662 protein kinase family protein contains ... 29 2.2
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 2.2
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 2.2
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 2.2
At3g54580.1 68416.m06039 proline-rich extensin-like family prote... 29 3.0
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 29 3.0
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 3.9
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 29 3.9
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi... 29 3.9
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 3.9
At1g28240.1 68414.m03466 expressed protein 29 3.9
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 28 5.2
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 28 5.2
At2g26410.1 68415.m03169 calmodulin-binding family protein simil... 28 5.2
At5g24040.1 68418.m02824 F-box family protein similar to unknown... 28 6.8
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 6.8
At3g18890.1 68416.m02399 expressed protein similar to UV-B and o... 28 6.8
At1g61080.1 68414.m06877 proline-rich family protein 28 6.8
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 27 9.0
At2g43150.1 68415.m05358 proline-rich extensin-like family prote... 27 9.0
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP V P P Y P P FS V P P +P P YS PP
Sbjct: 602 PPPPVHSPPPPV-YSPPPPPPVHSPPPPVFSPPPPVHSPPPPVYSPPPPVYSPPP 655
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/59 (30%), Positives = 21/59 (35%)
Frame = +1
Query: 265 PGPGTYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVPGPGVYCPEKVCVTLPWAPGTY 441
P P Y+ + PP F+ P PP P P VY P V P P Y
Sbjct: 609 PPPPVYSPPPPPPVHSPPPPVFSPPPPVHSPPPPVYSPPPPVYSPPPPPVKSPPPPPVY 667
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/55 (32%), Positives = 21/55 (38%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP V P P + P + P S V P P +P P YS PP
Sbjct: 595 PPPPVHSPPPPV-HSPPPPVYSPPPPPPVHSPPPPVFSPPPPVHSPPPPVYSPPP 648
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPV 175
PPP PTP P P+ +P+ + G LP PG +P P+ PP+
Sbjct: 232 PPPSSSPTPGPDSPLPSPGPPP----SPSPTPGPDSPLPSPGPDSPLPSPGPDPPL 283
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLD-HAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGE 184
PPP PTP P P+ + L P S PGP S P+P S P+ G
Sbjct: 176 PPPSPSPTPGPDSPLPSPGPDSPLPLPGPPPSPS---PTPGPDSPLPSPGPDSPLPLPGP 232
Query: 185 AKEGSKRAAP 214
S P
Sbjct: 233 PPSSSPTPGP 242
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP V P P + P + +P +S P P +P P T+S PP
Sbjct: 587 PPPPVHSPPPPPVFSPPPPVFSPPPPSPVYSPPPPSHSPPPPVYSPPPPTFSPPP 641
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAP-AFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP V P P Y P V P FS V P P +P P +S PP
Sbjct: 543 PPPPVHSPPPPPVYSPPPPPPPVHSPPPPVFSPPPPVYSPPPPVHSPPPPVHSPPP 598
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/70 (34%), Positives = 27/70 (38%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGEA 187
PPP P P P Y P V P+ S + S P K +P S PP E
Sbjct: 606 PPPVHSPPPPPPVYSPPPP---VFSPPPSQSPPVVYSPPPRPPKINSPPVQSPPPAPVEK 662
Query: 188 KEGSKRAAPA 217
KE APA
Sbjct: 663 KETPPAHAPA 672
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP V +P P Y P+ P +S +V P P P YS PP
Sbjct: 956 PPPYVYSSPPPPYYSPSPKVDYKSPPPPYYSPSPKVDYKSP----PPPYVYSSPP 1006
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/55 (34%), Positives = 22/55 (40%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP EP+P P E + + RA P L P P P YS PP
Sbjct: 505 PPPEYEPSPPPPSSEMSPSVRAYPPPPP---------LSPPPPSPPPPYIYSSPP 550
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPN 58
PPP+ E TP+P +Y P+
Sbjct: 579 PPPKYEQTPSPREYYPS 595
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 8 PPPRVEPTP-APCDYEPN-KAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP P+P AP P K + + P+ G S P P TP P T + PP
Sbjct: 117 PPPDASPSPPAPTTTNPPPKPSPSPPGETPS-PPGETPSPPKPSPSTPTPTTTTSPP 172
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAP 151
PP V P P P D P+ A + P S P P +TP+P
Sbjct: 109 PPQTVSPPPPP-DASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSP 155
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKA-ARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP P PAP P + A A + S S P P S P P+T S+ P
Sbjct: 105 PPPVATPPPAPLASPPAQVPAPAPTTKPDSPSPSPSSSPPLPSSDAPGPSTDSISP 160
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKA-ARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP P PAP P + A A + S S P P S P P+T S+ P
Sbjct: 105 PPPVATPPPAPLASPPAQVPAPAPTTKPDSPSPSPSSSPPLPSSDAPGPSTDSISP 160
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/65 (29%), Positives = 24/65 (36%)
Frame = +2
Query: 11 PPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGEAK 190
PP V P PAP P A+ +P + P AP+ S+PP A
Sbjct: 113 PPPVSPPPAPTSPPPTPASPPPAPASPPPAPASPPPAPVSPPPVQAPSPISLPPAPAPAP 172
Query: 191 EGSKR 205
KR
Sbjct: 173 TKHKR 177
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 298 AAALTKRPPAFTMAPRRELKPPTAAVPGPGVYCPEKVCVTLPWAP 432
A+A T PP + P PPT A P P P + P AP
Sbjct: 106 ASAPTVSPPPVSPPPAPTSPPPTPASPPPAPASPPPAPASPPPAP 150
>At3g54580.1 68416.m06039 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 951
Score = 29.1 bits (62), Expect = 3.0
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP V +P P Y P+ P +S +V P P P YS PP
Sbjct: 522 PPPYVYSSPPPPYYSPSPKVYYKSPPPPYYSPSPKVYYKSP----PPPYVYSSPP 572
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = +2
Query: 5 WPPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
W PP PAP Y+P HAP + + P S P N PP
Sbjct: 181 WGPPHGYMAPAPPPYDPYAGY-----HAPPVPMPTPPPIAAPSSYVPVQNIKDNPP 231
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGEA 187
PPP P PAP + N + A+ PA R LP S +P P T PP LG+
Sbjct: 729 PPPPPPPPPAPPTPQSNGIS-AMKSSPPAPPAPPR--LP-THSASPPPPTAPPPPPLGQT 784
Query: 188 KEGSKRAAP 214
+ S P
Sbjct: 785 RAPSAPPPP 793
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP P P Y P A + PA G PG G PAP PP
Sbjct: 39 PPPGAYP---PAGYPPGAYPPAPGGYPPAPGYGGYPPAPGYGGYPPAPGHGGYPP 90
>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
to proline-rich protein [Arabidopsis thaliana]
gi|6782442|gb|AAF28388; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 448
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 8 PPPRVE-PTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAP 151
PPP+ E P P P Y+P + V P + +V LP P K P P
Sbjct: 201 PPPKKEIPPPVPV-YDP-PPKKEVPPPVPVYKPPPKVELPPPIPKKPCP 247
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 316 RPPAFTMAPRRELKPPTAAVPGPGVYCPEKVCVTLPWAP 432
+PP + P++ PP P V P+K C LP P
Sbjct: 384 KPPV--VIPKKPCPPPVPVYKPPVVVIPKKPCPPLPQLP 420
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/54 (24%), Positives = 21/54 (38%)
Frame = +2
Query: 11 PPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PP V P+P + +P ++ + P PG P+P+ PP
Sbjct: 406 PPVVVPSPPTTPSPGGSPPSPSISPSPPITVPSPPTTPSPGGSPPSPSIVPSPP 459
>At1g28240.1 68414.m03466 expressed protein
Length = 581
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +2
Query: 8 PPP----RVEPTPAPCDYEPNKAARAVLDHAPAFS 100
PPP R P P P Y P + A A++ +AP+FS
Sbjct: 155 PPPADRKRTGPRPCPVCYLPVEEAVALMPNAPSFS 189
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 105 PIENAGAWSRTARAALFGS*SQGAGVGSTRGGGH 4
P + ++SR R+ +GS +G G GS RGGG+
Sbjct: 178 PPKREESFSRGPRSGGYGS-ERGGGYGSERGGGY 210
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 105 PIENAGAWSRTARAALFGS*SQGAGVGSTRGGGH 4
P + ++SR R+ +GS +G G GS RGGG+
Sbjct: 178 PPKREESFSRGPRSGGYGS-ERGGGYGSERGGGY 210
>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 516
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/68 (29%), Positives = 26/68 (38%)
Frame = +2
Query: 20 VEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPVLGEAKEGS 199
+E TP P D P+ R P + LP P P P + GE+KE
Sbjct: 36 LEETP-PVDPSPSSVHRPYPPPPPLPDFAPQPLLPPPSPPPPPPAYTINTRIYGESKESK 94
Query: 200 KRAAPAFS 223
R A A +
Sbjct: 95 NRQALALA 102
>At5g24040.1 68418.m02824 F-box family protein similar to unknown
protein (gb|AAD22308.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 373
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 633 TLYITTFD*QLRCDKVLKTLCLMTNDRTLL 544
TL + TF CDK K LMT D+ +L
Sbjct: 224 TLEVNTFQRSRPCDKTRKRWLLMTGDKLIL 253
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP P P P Y P P +S P P P P YS PP
Sbjct: 451 PPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSP------PPPSPPPPPPPVYSPPP 499
>At3g18890.1 68416.m02399 expressed protein similar to UV-B and
ozone similarly regulated protein 1 UOS1 [Pisum sativum]
GI:20339364
Length = 641
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 277 TYTTDRAAAALTKRPPAFTMAPRRELKPPTAAVP 378
T T+ AA A +K P A +LKPPT+ P
Sbjct: 517 TSVTETAAPATSKMRPLSPYAIYADLKPPTSPTP 550
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/55 (36%), Positives = 22/55 (40%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP P P P P K PAF L+ S P P P P T + PP
Sbjct: 474 PPP---PPPLPPAVMPLKHFAPPPPTPPAFK-PLKGSAPPPPPPPPLPTTIAAPP 524
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +2
Query: 11 PPRVEPTPAPCDYEP--NKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPPV 175
PP +E P P Y P K +H P + P P K P P Y PP+
Sbjct: 56 PPPIEKYPPPVQYPPPIKKYPPPPYEHPPVKYPPPIKTYPHPPVKYPPPEQYP-PPI 111
>At2g43150.1 68415.m05358 proline-rich extensin-like family protein
similar to CRANTZ hydroxyproline-rich glycoprotein
[Manihot esculenta] gi|7211797|gb|AAF40442; similar to
extensin gi|1165322|gb|AAB53156; contains proline-rich
extensin domains, INTERPRO:IPR002965
Length = 212
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +2
Query: 8 PPPRVEPTPAPCDYEPNKAARAVLDHAPAFSIGLRVSLPGPGSKTPAPNTYSMPP 172
PPP V+ P P YE V P + S P P P P YS PP
Sbjct: 45 PPPPVKSPPPP--YEYKSPPPPVKSPPPPYYYH---SPPPPVKSPPPPYVYSSPP 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,724,156
Number of Sequences: 28952
Number of extensions: 375011
Number of successful extensions: 1583
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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