Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0467.Seq
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 117 1e-27
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 102 3e-23
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 63 3e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 56 3e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 54 1e-08
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 50 2e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 6e-06
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 46 6e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 45 7e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 43 4e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 42 7e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 39 6e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 39 6e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 38 8e-04
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 36 0.003
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 36 0.004
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 34 0.014
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 34 0.014
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 34 0.018
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 31 0.17
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 30 0.22
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.39
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 0.51
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.2
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 27 2.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 27 2.7
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 3.6
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 3.6
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 4.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 6.3
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 25 8.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 8.3
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 8.3
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 8.3
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom... 25 8.3
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 117 bits (281), Expect = 1e-27
Identities = 61/100 (61%), Positives = 75/100 (75%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKTATFSIS+LQ+IDTS+++C ALILAPTRELAQQIQKVV+ALGD +N +CHACIGGT+
Sbjct: 67 TGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTL 126
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDLINFVRALHAKHHQTF 555
A + ++ TPGRV+D+I RAL Q F
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRVHDMIQ-RRALPTDAVQMF 165
Score = 96.3 bits (229), Expect = 3e-21
Identities = 42/61 (68%), Positives = 54/61 (88%)
Frame = +2
Query: 71 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 250
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 251 S 253
S
Sbjct: 65 S 65
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 102 bits (245), Expect = 3e-23
Identities = 52/86 (60%), Positives = 61/86 (70%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKTATFSI ILQ ID S+R+ ALIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT
Sbjct: 69 TGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTS 128
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDLI 513
++ TPGRV D+I
Sbjct: 129 VGNDIKKLDYGQHVVSGTPGRVTDMI 154
Score = 76.2 bits (179), Expect = 3e-15
Identities = 38/62 (61%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Frame = +2
Query: 71 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 247
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 248 QS 253
QS
Sbjct: 66 QS 67
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 62.9 bits (146), Expect = 3e-11
Identities = 36/85 (42%), Positives = 44/85 (51%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKTA F I L+++DT + LIL PTRELA Q +V LG H+N K GGT
Sbjct: 92 TGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTT 151
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDL 510
++ TPGRV DL
Sbjct: 152 LRDDIIRLNDTVHIVVGTPGRVLDL 176
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +2
Query: 23 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 190
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 191 IQQRAIMPCIQGRDVIAQAQS 253
IQ+ +I + GRD++A+A++
Sbjct: 70 IQEESIPIALSGRDILARAKN 90
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 56.4 bits (130), Expect = 3e-09
Identities = 34/94 (36%), Positives = 50/94 (53%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKC 411
C + +GKTA F++ I+++ ALIL PTRELA QI + ALG +LN K
Sbjct: 47 CIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKH 106
Query: 412 HACIGGTMSVKIFANWRLVFMLLWVTPGRVYDLI 513
+GG ++ + ++ TPGR+ DLI
Sbjct: 107 ALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLI 140
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKT 53
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 54.4 bits (125), Expect = 1e-08
Identities = 37/100 (37%), Positives = 57/100 (57%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKTA F++++L ++D S+ + A+ LAP+RELA+QI VV +G + K G
Sbjct: 164 TGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK--TAFGIKD 221
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDLINFVRALHAKHHQTF 555
SV A ++ ++ TPG V DL+ R L A+ + F
Sbjct: 222 SVPKGA--KIDAQIVIGTPGTVMDLMK-RRQLDARDIKVF 258
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQS 253
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QS
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQS 162
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/96 (30%), Positives = 49/96 (51%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G + + +GG
Sbjct: 94 SGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMD 153
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDLINFVRALHAKH 543
V +L TPGR+ D + + K+
Sbjct: 154 MVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKN 189
Score = 38.3 bits (85), Expect = 8e-04
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +2
Query: 89 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
D+ ++ +TF ++ + +EL GF+ P+ IQQ AI + RDVI AQ+
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQT 92
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 45.6 bits (103), Expect = 6e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQART 60
Score = 39.5 bits (88), Expect = 4e-04
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Frame = +1
Query: 256 TGKTATFSISILQ------QIDTSIRECXALILAPTRELAQQIQKVV 378
+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 62 SGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 45.6 bits (103), Expect = 6e-06
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEK 265
F D LK ELLR I GFE PS +QQ I I G DV+ QA+S + K
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGK 101
Score = 39.1 bits (87), Expect = 5e-04
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMS 438
GKTA F +S LQQI+ E L+L TRELA QI+ +L A G ++
Sbjct: 100 GKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGIN 159
Query: 439 VK----IFANWRLVFMLLWVTPGRVYDLI 513
+K F + ++ TPGR+ L+
Sbjct: 160 IKQDMEAFKDKSKSPHIVVATPGRLNALV 188
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 45.2 bits (102), Expect = 7e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++ K L L
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFL 144
Score = 27.5 bits (58), Expect = 1.6
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATF---SISILQQIDTSIRE-CXALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F +I +L + R +I++PTRELA QI V L + + I
Sbjct: 137 SGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVI 196
Query: 424 GGTMSVKIFANWRLVFMLLWVTPGRVYD 507
GG LL TPGR+ D
Sbjct: 197 GGANRRAEADKLVKGVNLLVATPGRLLD 224
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 42.7 bits (96), Expect = 4e-05
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMART 115
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECX--ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKTA F I +++ + +++ ALIL+P RELA Q KVV + + A +GG
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGG 176
Query: 430 TMSVKIFANWRLVFMLLWVTPGRVYDL 510
+ F+ ++ TPGR L
Sbjct: 177 VSLEEQFSLLSGKPDIVVATPGRFLHL 203
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 41.9 bits (94), Expect = 7e-05
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQI---DTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
+GKTA F + IL+++ + LIL PTRELA Q V + + CIG
Sbjct: 307 SGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIG 366
Query: 427 GTMSVKI-FANWRLVFMLLWVTPGRVYD 507
G +S+K+ R ++ TPGR D
Sbjct: 367 G-LSLKLQEQELRKRPDIVIATPGRFID 393
Score = 39.1 bits (87), Expect = 5e-04
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 247
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAA 303
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 38.7 bits (86), Expect = 6e-04
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQI--DTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKT F I IL+ + + AL++APTRELA QI + + N + + GG
Sbjct: 170 SGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGG 229
Query: 430 TMSVKIFANWRLVFMLLWVTPGRVYDLIN 516
K ++ TPGR++ +IN
Sbjct: 230 LAVQKQQRLLNKHPHVVVATPGRLWSVIN 258
Score = 28.7 bits (61), Expect = 0.68
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
V + +L E+L + GF KP IQ I G D+I +A + K L
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTL 174
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 38.7 bits (86), Expect = 6e-04
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Frame = +1
Query: 256 TGKTATFSISILQQI-------DTSIRECXALILAPTRELAQQIQKVVIALGD----HLN 402
+GKT + + I+Q++ T A+I+APTREL QQI V L + H
Sbjct: 189 SGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWI 248
Query: 403 AKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYDLINFVRALHAKHHQTFWFLM 567
C+ IGG A R +L TPGR+ D + AL Q W ++
Sbjct: 249 VSCNV-IGGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVS--QVRWVVL 300
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 38.3 bits (85), Expect = 8e-04
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVY 504
A++LAPTRELAQQIQ + L +C + +GG + ++ TPGR+
Sbjct: 328 AVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLL 387
Query: 505 DLI 513
D +
Sbjct: 388 DCL 390
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLL 274
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++ K +
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 275 SL 280
L
Sbjct: 472 FL 473
Score = 32.3 bits (70), Expect = 0.055
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVY 504
A+I+ PTRELA QI + LN + GG A+ + ++ TPGR+
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMI 553
Query: 505 DLIN 516
D+++
Sbjct: 554 DVLS 557
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 35.9 bits (79), Expect = 0.004
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +1
Query: 256 TGKTATFSISILQQID---TSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
+GKT F I LQ ++ + L+++PTRELA Q + + +L N K G
Sbjct: 213 SGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYG 272
Query: 427 GTMSVKIFANWRLVFMLLWVTPGRVYDLIN 516
G + + +++ TPGR+ DLIN
Sbjct: 273 GAPKSEQARAAKNASVIIG-TPGRLLDLIN 301
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 34.3 bits (75), Expect = 0.014
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQID----TSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F + +++ + TS+ AL+++PTRELA Q + ++ +G + I
Sbjct: 87 SGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLII 146
Query: 424 GGTMSVKIFANWRLVFM-LLWVTPGRVYDLIN 516
GG + RL M +L TPGR+ I+
Sbjct: 147 GGNNYKE--EKERLSRMNILVCTPGRLLQHID 176
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 34.3 bits (75), Expect = 0.014
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVI 238
V TF++ +L+ + GFE P+ IQQ+A + GRD++
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMV 163
Score = 32.3 bits (70), Expect = 0.055
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
L+LAPTRELA QIQ+ G + GG + + TPGR+ D
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLD 258
Query: 508 LIN 516
+++
Sbjct: 259 MLD 261
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 33.9 bits (74), Expect = 0.018
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 244 SPVRTGKTATFSISILQQIDTSIRE-CXALILAPTRELAQQIQK 372
+P +GKT + ILQ++ + A+I+APTREL +QI +
Sbjct: 90 APTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 30.7 bits (66), Expect = 0.17
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 6/106 (5%)
Frame = +1
Query: 256 TGKTATFSISILQQI-----DTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
TGKT F + + + + + ++IL+PTRELA QI + L +
Sbjct: 87 TGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYA 146
Query: 421 IGGTMSVK-IFANWRLVFMLLWVTPGRVYDLINFVRALHAKHHQTF 555
IGG ++ A R LL TPGR+ D + R L + +F
Sbjct: 147 IGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSF 192
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 30.3 bits (65), Expect = 0.22
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQI---DTSIRECXALILAPTRELAQQIQKV 375
+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 49 SGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.39
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 86 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 232
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 29.1 bits (62), Expect = 0.51
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQID-TSIRECXALILAPTRELAQQIQK 372
S+ +GKT ++ I I+Q + ++ +++ PTREL Q+ K
Sbjct: 179 SAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAK 223
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 83 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 175
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 235 YRSSPVRTGKTATFSISILQQIDTSIRECXALILAPTRE-LAQQIQKVVIALG 390
Y S+ ++TG T + I Q IDT I L P R+ L Q + + A+G
Sbjct: 131 YTSNEIKTGYVITETPKISQNIDTGITIPTQAPLVPQRKNLRQHFRPIGDAVG 183
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +3
Query: 60 DLREWTLGHLTPT 98
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 2.7
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFM---LLWVTPGR 498
LILAPTREL QI + + A GG I A R + LL TPGR
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGG---ADIRAQIRQIDQGCDLLSATPGR 315
Query: 499 VYDLIN 516
+ DLI+
Sbjct: 316 LVDLID 321
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 399 QVITKSYHHLLNLLGQLSCGSQDQ 328
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 259 GKTATFSISILQQI----DTSIRECXALILAP-TRELAQQIQ 369
G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 91 GSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 80 QGPFPEVHRNYLDPSMAHFWNPLANL 3
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 89 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 229
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +2
Query: 170 GFEKPSAIQQRAIMPCIQGRDVIAQAQSELEK 265
GF PSAIQQ I GRDV Q +L K
Sbjct: 173 GFSIPSAIQQEE----IGGRDVTDYLQLQLRK 200
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 8.3
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPC------IQGRDVIAQAQ----SELE 262
ET D ++ K GI +KP + QRAI + GRD Q Q S++E
Sbjct: 2255 ETIDGLHRKRLNEEGITLEERQKPEILNQRAITVLNRVSNKLTGRDFKPQQQLDVPSQVE 2314
Query: 263 KLLL 274
KL+L
Sbjct: 2315 KLIL 2318
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 285 DSTTNRYKHS*MXSFDPGSHKRAGPTNSEGGDSS 386
D+ TNR + SFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 573 KLHQEPKSLMVFGMKRTNEVYQIIYTTWSDPQEH 472
KL+ + L+ +G+K N++Y+ + S +EH
Sbjct: 513 KLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREH 546
>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 466 PISSWRISSRTLCHQCKHGI*HSSDHQELSPPSEFVGPALLWEPGS 329
PI W S+ L Q H Q+++PPS P L W+ S
Sbjct: 47 PIMYWANVSKELVQQVYHS-------QKIAPPSNTHSPFLFWKSQS 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,590
Number of Sequences: 5004
Number of extensions: 59276
Number of successful extensions: 200
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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