Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0467.Seq
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       38   7e-05
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 37.9 bits (84), Expect = 7e-05
 Identities = 17/50 (34%), Positives = 32/50 (64%)
 Frame = +2

Query: 104 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+   + GRD++A AQ+
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQT 242



 Score = 33.9 bits (74), Expect = 0.001
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
 Frame = +1

Query: 256 TGKTATFSISIL-----QQIDTSIR----ECXALILAPTRELAQQIQKVVIALGDHLNAK 408
           +GKTA F++ I+     + +D  +     E   +I++PTREL  QI + ++    +   K
Sbjct: 244 SGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILK 303

Query: 409 CHACIGGTMSVKIFANWRLVFMLLWVTPGRVYDLI 513
                GGT  +           +L  TPGR+ D +
Sbjct: 304 TVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFV 338


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
 Frame = +1

Query: 133 PQRRIVERHIRLWF*KTFC----NPATRNNALHPRTRCYRS-SPVRTGKTATFSISILQQ 297
           P +++    I  WF  TFC    N AT  NA+      ++    V   K A +++  ++ 
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWTVDEVEF 580

Query: 298 ID-TSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIG 426
                 R C      P++  +  +       GD LNA   A +G
Sbjct: 581 YKRRPQRACSTTGGVPSK--SPTLTHSPTMYGDALNANLQAALG 622


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 430 CHQCKHGI*HSS 395
           CH+CK+GI  SS
Sbjct: 43  CHKCKYGIAMSS 54


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 260 EKLLLSLYRFYNKSIQAFVNV 322
           E+L+  L+R YNK I+   N+
Sbjct: 28  ERLVRDLFRGYNKLIRPVQNM 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,953
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)