Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0467.Seq
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 95 4e-20
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 93 2e-19
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 91 4e-19
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 85 3e-17
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 73 1e-13
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 60 8e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 60 8e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 57 8e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 57 8e-09
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 53 2e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 51 7e-07
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 47 8e-06
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 46 1e-05
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 46 1e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 46 3e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 46 3e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 46 3e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 45 3e-05
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 44 6e-05
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 43 1e-04
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 43 2e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 42 4e-04
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 41 7e-04
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 40 0.001
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 39 0.002
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 39 0.003
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 39 0.003
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 39 0.003
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 38 0.004
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 38 0.004
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.004
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 38 0.005
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 38 0.005
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 38 0.005
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.007
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 38 0.007
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 38 0.007
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 37 0.012
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 36 0.015
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 36 0.020
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 36 0.020
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 36 0.020
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 35 0.036
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 35 0.047
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 34 0.082
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 33 0.11
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 33 0.11
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 33 0.14
At3g10020.1 68416.m01202 expressed protein 33 0.19
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 32 0.25
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 31 0.77
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 30 1.0
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 30 1.0
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 30 1.3
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 29 1.8
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 29 1.8
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 29 2.3
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 29 2.3
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 2.3
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 29 2.3
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 29 3.1
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 5.4
At5g46340.1 68418.m05704 O-acetyltransferase-related similar to ... 27 7.1
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 27 7.1
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 27 7.1
At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containi... 27 7.1
At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme ... 27 7.1
At2g04810.1 68415.m00494 F-box family protein contains F-box dom... 27 7.1
At1g76010.1 68414.m08825 expressed protein 27 7.1
At5g28463.1 68418.m03457 hypothetical protein 27 9.4
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 27 9.4
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 27 9.4
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 94.7 bits (225), Expect = 4e-20
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKTATF +LQQ+D S+ +C AL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT
Sbjct: 87 TGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTS 146
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDLI 513
+ + ++ TPGRV+D++
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFDML 172
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +2
Query: 92 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQS
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQS 85
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 92.7 bits (220), Expect = 2e-19
Identities = 46/86 (53%), Positives = 61/86 (70%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKTATF +LQQ+D S+ +C AL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT
Sbjct: 89 TGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTS 148
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDLI 513
+ + ++ TPGRV+DL+
Sbjct: 149 VREDQRVLQSGVHVVVGTPGRVFDLL 174
Score = 79.4 bits (187), Expect = 2e-15
Identities = 37/57 (64%), Positives = 46/57 (80%)
Frame = +2
Query: 83 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQS
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQS 87
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 91.5 bits (217), Expect = 4e-19
Identities = 44/86 (51%), Positives = 61/86 (70%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKTATF +LQQ+D ++ +C AL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT
Sbjct: 87 TGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTS 146
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDLI 513
+ + ++ TPGRV+D++
Sbjct: 147 VREDQRILQAGVHVVVGTPGRVFDML 172
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = +2
Query: 92 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQS
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQS 85
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 85.0 bits (201), Expect = 3e-17
Identities = 37/54 (68%), Positives = 47/54 (87%)
Frame = +2
Query: 92 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQS
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQS 81
Score = 78.6 bits (185), Expect = 3e-15
Identities = 40/86 (46%), Positives = 54/86 (62%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKT+ ++S+ Q +DTS RE ALIL+PTRELA Q +K + A+G H N + HACIGG
Sbjct: 83 TGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNS 142
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDLI 513
+ ++ TPGRV D+I
Sbjct: 143 VGEDIRKLEHGVHVVSGTPGRVCDMI 168
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/86 (41%), Positives = 52/86 (60%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKT+ +IS+ Q ++ S R+ L+L+P+RELA Q +K + A+G H N + HACIGG
Sbjct: 70 TGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKS 129
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDLI 513
+ + TPGRVYD+I
Sbjct: 130 IGEDIKKLERGVHAVSGTPGRVYDMI 155
Score = 72.9 bits (171), Expect = 1e-13
Identities = 29/48 (60%), Positives = 43/48 (89%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQS
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQS 68
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.5 bits (140), Expect = 8e-10
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT- 432
TGKTA F I +L++ID A+I+ PTRELA Q +V LG HL + GGT
Sbjct: 179 TGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTS 238
Query: 433 MSVKIFANWRLVFMLLWVTPGRVYDL 510
+ I ++ V +L+ TPGR+ DL
Sbjct: 239 LKDDIMRLYQPVHLLVG-TPGRILDL 263
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKN 177
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 60.5 bits (140), Expect = 8e-10
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT- 432
TGKTA F I +L++ID A+I+ PTRELA Q +V LG HL + GGT
Sbjct: 179 TGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTS 238
Query: 433 MSVKIFANWRLVFMLLWVTPGRVYDL 510
+ I ++ V +L+ TPGR+ DL
Sbjct: 239 LKDDIMRLYQPVHLLVG-TPGRILDL 263
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKN 177
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 57.2 bits (132), Expect = 8e-09
Identities = 34/85 (40%), Positives = 43/85 (50%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKT F I +L++ID + A+IL PTRELA Q +V L +LN + GGT
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTS 231
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDL 510
LL TPGR+ DL
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILDL 256
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 170
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 57.2 bits (132), Expect = 8e-09
Identities = 34/85 (40%), Positives = 43/85 (50%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTM 435
TGKT F I +L++ID + A+IL PTRELA Q +V L +LN + GGT
Sbjct: 172 TGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTS 231
Query: 436 SVKIFANWRLVFMLLWVTPGRVYDL 510
LL TPGR+ DL
Sbjct: 232 LRDDIMRLHQPVHLLVGTPGRILDL 256
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/45 (48%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 170
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT- 432
TGKT F I L++ID A+IL PTRELA Q +V L +L + GGT
Sbjct: 202 TGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTS 261
Query: 433 MSVKIFANWRLVFMLLWVTPGRVYDL 510
+ I ++ V +L+ TPGR+ DL
Sbjct: 262 LRDDIMRLYQPVHLLVG-TPGRILDL 286
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKN 200
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 50.8 bits (116), Expect = 7e-07
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-- 429
+GKTA F++ IL ++ AL++ PTRELA Q+ + ALG LN +C +GG
Sbjct: 106 SGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMD 165
Query: 430 --TMSVKIFANWRLVFMLLWVTPGRVYDLI 513
T ++ + + +V TPGR+ L+
Sbjct: 166 MLTQTMSLVSRPHIVI----TTPGRIKVLL 191
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+ + L E + G KP+ +Q + + GRDV+ AQ+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQT 104
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +2
Query: 101 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++ K L L
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 281 YRFYNKSIQA 310
K A
Sbjct: 102 LPLLQKLFSA 111
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/49 (51%), Positives = 28/49 (57%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEK 265
F D LK ELLR I GFE PS +Q I I G DVI QA+S + K
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGK 96
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTM 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG +
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGG-V 153
Query: 436 SVKI 447
++KI
Sbjct: 154 NIKI 157
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 46.4 bits (105), Expect = 1e-05
Identities = 25/49 (51%), Positives = 28/49 (57%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEK 265
F D LK ELLR I GFE PS +Q I I G DVI QA+S + K
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGK 96
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTM 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG +
Sbjct: 95 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGG-V 153
Query: 436 SVKI 447
++KI
Sbjct: 154 NIKI 157
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Frame = +1
Query: 211 ALHPRTRCYRSSPVRTGKTATFSISILQQIDTSIRECXA---LILAPTRELAQQIQKVVI 381
AL R C S+ +GKTA F++ L+++ + A LIL PTRELA QI ++
Sbjct: 201 ALTGRDLC-ASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQ 259
Query: 382 ALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
L + KC +GG + R + ++ TPGR+ D
Sbjct: 260 NLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 247
+TF ++NL LLR G++KP+ IQ I + GRD+ A A
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASA 211
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDT--------SIRECXALILAPTRELAQQIQKVVIALGDH 396
S+ +GKTA+F + I+ + T R A++LAPTREL Q++ LG
Sbjct: 153 SADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKG 212
Query: 397 LNAKCHACIGG-TMSVKIFANWRLVFMLLWVTPGRVYDLIN 516
L K +GG MS +++ + V +++ TPGRV DL++
Sbjct: 213 LPFKTALVVGGDPMSGQLYRIQQGVELIIG-TPGRVVDLLS 252
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQIDT--------SIRECXALILAPTRELAQQIQKVVIALGDH 396
S+ +GKTA+F + I+ + T R A++LAPTREL Q++ LG
Sbjct: 16 SADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKG 75
Query: 397 LNAKCHACIGG-TMSVKIFANWRLVFMLLWVTPGRVYDLIN 516
L K +GG MS +++ + V +++ TPGRV DL++
Sbjct: 76 LPFKTALVVGGDPMSGQLYRIQQGVELIIG-TPGRVVDLLS 115
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE--CXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 429
+GKTA F I +L+++ + + ALIL+PTR+LA+Q K LG + + +GG
Sbjct: 76 SGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGG 135
Query: 430 TMSVKIFANWRLVFMLLWVTPGRVYDLINFV 522
F ++ TPGR+ L++ V
Sbjct: 136 DSMEDQFEELTKGPDVIIATPGRLMHLLSEV 166
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
F+ +NL + I G++ P+ IQ++ + + G DV+A A++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMART 74
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/51 (37%), Positives = 35/51 (68%)
Frame = +2
Query: 101 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQT 55
Score = 39.1 bits (87), Expect = 0.002
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Frame = +1
Query: 256 TGKTATFSISILQQI-----DTSIRE-------CXALILAPTRELAQQIQKVVIALGDHL 399
+GKT F+I ILQ + D+ ++ A +L+PTRELA QI + ALG +
Sbjct: 57 SGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADI 116
Query: 400 NAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYDLINFVRALHAK 540
+ +C +GG ++ ++ TPGR++D ++ + K
Sbjct: 117 SLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLK 163
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 259 GKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTM 435
GKTA F +S LQQI+ S + AL+L TRELA QI + +L + K GG +
Sbjct: 12 GKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGG-V 70
Query: 436 SVKI 447
++KI
Sbjct: 71 NIKI 74
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKVVIALG 390
+GKT F + +L ++D ++RE AL + PTRELA Q +V+ +G
Sbjct: 142 SGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 34.3 bits (75), Expect = 0.062
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQ---GRDVIAQAQS 253
F+D+NL EL++G+Y FEKPS IQ + +P I + +IAQA +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAIS-LPMIMTPPHKHLIAQAHN 140
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 41.5 bits (93), Expect = 4e-04
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRECXA----------LILAPTRELAQQIQKVVIALGDHLNA 405
TGKT F I I++++ + A L+LAPTRELA+Q++K + +L+
Sbjct: 150 TGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLST 209
Query: 406 KCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYDLI 513
C G + +++ A R V +++ TPGR+ DLI
Sbjct: 210 VC-VYGGVSYTIQQSALTRGVDVVVG-TPGRIIDLI 243
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 128 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
++L + L + G IQ+ ++P +QGRD+IA+A++ K L
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTL 154
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKT 274
Score = 33.1 bits (72), Expect = 0.14
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +1
Query: 256 TGKTATFS----ISILQQIDTSIRECX-ALILAPTRELAQQIQKVVIALGDHLNAKCHAC 420
+GKTA F + I+ Q + E +I APTRELA QI + A
Sbjct: 276 SGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAV 335
Query: 421 IGGTMSVKIFANWRLVFMLLWVTPGRVYDLI 513
GG + F + ++ TPGR+ D++
Sbjct: 336 YGGMSKHEQFKELKAGCEIVVATPGRLIDML 366
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQI-DTSIRECX----ALILAPTRELAQQIQKVVIALGDH 396
C + +GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 569 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKP 628
Query: 397 LNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYDLI 513
L +C GG+ + + + ++ TPGR+ D++
Sbjct: 629 LGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 667
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++ K L
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTL 581
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Frame = +1
Query: 256 TGKTATFSISILQQI--------DTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKC 411
+GKTA F + +L I + A+++APTRELAQQI++ + +L +
Sbjct: 361 SGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRV 420
Query: 412 HACIGG----TMSVKIFANWRLVFMLLWVTPGRVYDLI 513
+ +GG +KI +V TPGR+ D +
Sbjct: 421 TSIVGGQSIEEQGLKITQGCEIVI----ATPGRLIDCL 454
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAET 359
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
L+L+PTRELA QIQ+ + G C GG + ++ TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 508 LINFVR 525
++ R
Sbjct: 294 ILEMRR 299
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++ K L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
L+L+PTRELA QIQ+ + G C GG + ++ TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 508 LINFVR 525
++ R
Sbjct: 294 ILEMRR 299
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++ K L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
L+L+PTRELA QIQ+ + G C GG + ++ TPGR+ D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 508 LINFVR 525
++ R
Sbjct: 294 ILEMRR 299
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++ K L
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTL 210
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
L+L+PTRELA QIQ + G C GG ++ TPGR+ D
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 508 LINFVR-ALH 534
++ R +LH
Sbjct: 365 ILEMKRISLH 374
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 152 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
R +Y+ GF PS IQ ++ +Q RD++A A++ K L
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTL 281
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQQI-DTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
+SP +GKT ++++ I+Q + +R AL++ PTR+LA Q++ V A+ + +
Sbjct: 68 NSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVGLSVGS 127
Query: 418 CIG 426
+G
Sbjct: 128 AVG 130
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVY 504
ALI+ PTRELA Q+ + + +L+ K +GG S K + ++ TPGR++
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLW 341
Query: 505 DLINF-VRALHAKHHQTFWFLMKLD 576
+L++ + L H +F+ L + D
Sbjct: 342 ELMSAGEKHLVELHSLSFFVLDEAD 366
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 37.9 bits (84), Expect = 0.005
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQI------DTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKT F I I+ +I R L+LAPTRELA+Q++K L+ C
Sbjct: 152 TGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTIC-- 209
Query: 418 CIGGTMSVKIFANWRLVFMLLWVTPGRVYDLI 513
GGT + + TPGRV DL+
Sbjct: 210 LYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLM 241
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++ K L L
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFL 144
Score = 32.7 bits (71), Expect = 0.19
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Frame = +1
Query: 256 TGKTATF---SISILQQIDTSIRE-CXALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F ++ +L + S R +++ PTRELA Q + V L H + I
Sbjct: 137 SGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVI 196
Query: 424 GGTMSVKIFANWRLVFMLLWVTPGRVYDLINFVRALHAKH 543
GG L+ TPGR+ D + +A KH
Sbjct: 197 GGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKH 236
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/62 (35%), Positives = 28/62 (45%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
LILAPTRELA QIQ + G C GG ++ TPGR+ D
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLND 570
Query: 508 LI 513
++
Sbjct: 571 IL 572
Score = 36.3 bits (80), Expect = 0.015
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 116 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++ K L
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTL 487
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++ K L L
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFL 209
Score = 27.9 bits (59), Expect = 5.4
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 TGKTATF---SISILQQIDTSIRE-CXALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F ++ +L ++ + R L++ PTRELA Q V L + + I
Sbjct: 202 SGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVI 261
Query: 424 GGTMSVKIFANWRLVFMLLWVTPGRVYD 507
GG LL TPGR+ D
Sbjct: 262 GGEKRKTEAEILAKGVNLLVATPGRLLD 289
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 37.5 bits (83), Expect = 0.007
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +1
Query: 256 TGKTATFSISILQQI------DTSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHA 417
TGKT F I I+ +I + L+LAPTRELA+Q++K L+ C
Sbjct: 164 TGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTIC-- 221
Query: 418 CIGGTMSVKIFANWRLVFMLLWVTPGRVYDLI 513
GGT + + TPGR+ DL+
Sbjct: 222 LYGGTPIGQQMRELNYGIDVAVGTPGRIIDLM 253
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 37.5 bits (83), Expect = 0.007
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQI-DTSIRECX----ALILAPTRELAQQIQKVVIALGDH 396
C + +GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 436 CIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKA 495
Query: 397 LNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYDLI 513
L C GG+ + + + ++ TPGR+ D++
Sbjct: 496 LGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 534
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++ K L
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTL 448
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
L+L+PTRELA QI V+ G+ K GG+ + R ++ TPGR+ D
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRD 254
Query: 508 LI 513
LI
Sbjct: 255 LI 256
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLL 271
++TF + NL E +L FEKPS IQ + GRD+I A++ K L
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTL 166
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
L+LAPTRELA QIQ+ G K GG + + ++ TPGR+ D
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
Query: 508 LI 513
++
Sbjct: 236 MM 237
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLL 274
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++ K L
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 275 SL 280
L
Sbjct: 219 YL 220
Score = 35.9 bits (79), Expect = 0.020
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
LILAPTRELA QIQ+ G + GG + R ++ TPGR+ D
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 508 LI 513
++
Sbjct: 302 ML 303
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 35.9 bits (79), Expect = 0.020
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 95 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLL 274
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++ K L
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 275 SL 280
L
Sbjct: 219 YL 220
Score = 35.9 bits (79), Expect = 0.020
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVYD 507
LILAPTRELA QIQ+ G + GG + R ++ TPGR+ D
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 508 LI 513
++
Sbjct: 302 ML 303
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +2
Query: 86 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQT 205
Score = 35.1 bits (77), Expect = 0.036
Identities = 23/67 (34%), Positives = 29/67 (43%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVY 504
A+IL+PTRELA QI K GGT + +L TPGR+
Sbjct: 240 AVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLN 299
Query: 505 DLINFVR 525
DL+ R
Sbjct: 300 DLLERAR 306
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.1 bits (77), Expect = 0.036
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDTSIRECXALILAPTRELAQQIQKV 375
C + +GKT T+ + I I+ A+I+ PTREL Q+ KV
Sbjct: 116 CILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 34.7 bits (76), Expect = 0.047
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 113 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ + K L L
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYL 165
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 33.9 bits (74), Expect = 0.082
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 86 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQT 192
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/63 (34%), Positives = 28/63 (44%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVY 504
A+IL+PTRELA QI K GGT + +L TPGR+
Sbjct: 227 AVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLN 286
Query: 505 DLI 513
DL+
Sbjct: 287 DLL 289
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
FD L L+GI GF+ + +Q+ + +QG+D++A+A++ K + L
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFL 135
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.5 bits (73), Expect = 0.11
Identities = 23/67 (34%), Positives = 29/67 (43%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVY 504
A+IL+PTRELA QI K GGT + +L TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 505 DLINFVR 525
DL+ R
Sbjct: 292 DLLERAR 298
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.5 bits (73), Expect = 0.11
Identities = 23/67 (34%), Positives = 29/67 (43%)
Frame = +1
Query: 325 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTPGRVY 504
A+IL+PTRELA QI K GGT + +L TPGR+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLN 291
Query: 505 DLINFVR 525
DL+ R
Sbjct: 292 DLLERAR 298
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +2
Query: 56 DGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDV 235
D P G T D+ + FD L L+ I GFE + +Q+ + +QG+DV
Sbjct: 365 DKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDV 422
Query: 236 IAQAQSELEKLLLSL 280
+A+A++ K + L
Sbjct: 423 LAKAKTGTGKTVAFL 437
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +2
Query: 29 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 202
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 203 AIMPCIQGR 229
+ P + GR
Sbjct: 141 EVDPRLVGR 149
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 32.3 bits (70), Expect = 0.25
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Frame = +1
Query: 241 SSPVRTGKTATFSISILQ-------QIDTSIRECXALILAPTRELAQQIQKVVIALGDHL 399
++P TGKT + ++ ++D S AL++ PTREL Q+ + + L
Sbjct: 73 NAPTGTGKTIAYLAPLIHHLQGHSPKVDRS-HGTFALVIVPTRELCLQVYETLEKLLHRF 131
Query: 400 NAKCHACI-GGTMSVKIFANWRLVFMLLWVTPGRVYD 507
+ + GG K A R +L TPGR+ D
Sbjct: 132 HWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLD 168
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 170 GFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
GFE P+ +Q +AI + GRDV+ A + K + L
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYL 85
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 30.7 bits (66), Expect = 0.77
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSIRE----CXALILAPTRELAQQIQKVVIALGDHLNAKCHACI 423
+GKT F I IL+++ +I++PTRELA Q V+ +G I
Sbjct: 119 SGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLI 178
Query: 424 GGTMSVKIFANWRLVFMLLWVTPGRV 501
GG V + +L PGR+
Sbjct: 179 GGREGVDVEKERVHEMNILVCAPGRL 204
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +1
Query: 304 TSIRECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLW 483
T R ++L PTREL++Q+ +V ++ H + GG+ + ++
Sbjct: 185 TKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVV 244
Query: 484 VTPGRV 501
TPGR+
Sbjct: 245 GTPGRI 250
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 232 CYRSSPVRTGKTATFSISILQQIDT-SIRECXALILAPTRELAQQ 363
C+ +P +GKT F +L ++ S A+IL+P RELA Q
Sbjct: 181 CFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 146 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 247
+LR + GF++P+ IQ++AI + GR+ A A
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACA 185
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
FD+ + L+ + A G K + +Q + C+ G+D + +A++ K + L
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFL 430
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGT 432
LIL PTRELA QI A L +H IGGT
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGT 491
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 110 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLL 274
++ F DM LLR + G P+ IQ + + + GRD+I A + K L+
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 150
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Frame = +1
Query: 325 ALILAPTRELAQQ----IQKVVIALGD--HLNAKCHACIGGT-MSVKIFANWRLVFMLLW 483
AL++ P+RELA+Q +++ V +L + + + CIGG M ++ + V +++
Sbjct: 176 ALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVV- 234
Query: 484 VTPGRVYDLI 513
TPGR+ D++
Sbjct: 235 ATPGRLKDIL 244
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
FD+ + L+ + A G K + +Q + C+ G+D + +A++ K + L
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFL 383
Score = 28.3 bits (60), Expect = 4.1
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Frame = +1
Query: 325 ALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTMSVKIFANWRL---VFMLLWV 486
ALIL PTRELA QI K ++ D + + IGGT K+ RL +L
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGT-RFKL-DQQRLESEPCQILIA 463
Query: 487 TPGRVYDLI 513
TPGR+ D I
Sbjct: 464 TPGRLLDHI 472
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 119 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSELEKLLLSL 280
FD L L+ I G+E + +Q+ + ++G+DV+A+A++ K + L
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFL 109
Score = 28.3 bits (60), Expect = 4.1
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Frame = +1
Query: 256 TGKTATFSISILQQI--------DTSIRECXALILAPTRELAQQ-IQKVVIALGDHLNAK 408
TGKT F + ++ + D AL++ PTRELA Q + L H +
Sbjct: 102 TGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIG 161
Query: 409 CHACIGGT-MSVKIFANWRLVFMLLWVTPGRVYDLI 513
IGGT + ++ +L TPGR+ D I
Sbjct: 162 VQVVIGGTRLGLEQKRMQTNPCQILVATPGRLKDHI 197
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +1
Query: 313 RECXALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTMSVKIFANWRLVFMLLWVTP 492
R L+L PTRELA+Q+ A G L GG + ++ TP
Sbjct: 173 RSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTP 232
Query: 493 GRVYDLI 513
GR+ D I
Sbjct: 233 GRIKDHI 239
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 328 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 432
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/53 (26%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +1
Query: 277 SISILQQIDTSIRECX-ALILAPTRELA-QQIQKVVIALGDHLNAKCHACIGG 429
+++ L+++ +++EC A+ + P+ A Q++ + + LG+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -2
Query: 235 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFE 134
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 89 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQS 253
DT + ++ + L + + + GF++PS Q I + G+DVI A++
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAET 126
>At5g46340.1 68418.m05704 O-acetyltransferase-related similar to
O-acetyltransferase [Homo sapiens] GI:17016934
Length = 540
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 421 IGGTMSVKIFANWRLVFMLLWVTPG 495
IG M++KIF+ + +VF LLW PG
Sbjct: 283 IGSVMALKIFSCFLVVF-LLWEIPG 306
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 131 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 223
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 131 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 223
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At3g58620.1 68416.m06533 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 682
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 211 ALHPRTRCYRSSPVRTGKTATFSISILQQIDTSIRECXALILA-PTRELA-QQIQKVVIA 384
+L P YRS+ + A + S +++ +++EC + P+ A Q++ + +
Sbjct: 239 SLSPENPAYRSN-----RAAALAAS--GRLEEAVKECLEAVRCDPSYARAHQRLASLYLR 291
Query: 385 LGDHLNAKCHACIGG 429
LG+ NA+ H C+ G
Sbjct: 292 LGEAENARRHLCVSG 306
>At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme
oxygenase 2 [Arabidopsis thaliana]
gi|4530595|gb|AAD22109
Length = 354
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = -3
Query: 441 HGHCATNASMAFSIQVITKSYHHLLNLLGQLSCGSQDQS 325
H H T+ S F I K HLLNL SQ ++
Sbjct: 19 HSHLHTSISFPFQISTQRKPQKHLLNLCRSTPTPSQQKA 57
>At2g04810.1 68415.m00494 F-box family protein contains F-box domain
Pfam:PF00646
Length = 397
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 528 RTNEVYQIIYTTWSDPQEHEHQ 463
++N +Y + W D QEHEH+
Sbjct: 340 KSNSIYFVGEDVWPDHQEHEHR 361
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 26 NGPSKDQGSYDGPPGMDPG 82
+GPS+ +G YDGP G G
Sbjct: 299 DGPSQGRGGYDGPQGRGRG 317
>At5g28463.1 68418.m03457 hypothetical protein
Length = 131
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 592 LDKHFNQASSRTKKFDGVWHEAHERSLSNHIHDLE*PTRA*TPISSW 452
+ + F Q R K F+ + ++S++ H H + RA P+ SW
Sbjct: 47 IGQEFRQKKLRVKGFEDLKLGGGDKSVAEHSHGVMTIRRAGRPVFSW 93
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 27.1 bits (57), Expect = 9.4
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI------RECXALILAPTRELAQQIQKVVIALGDHL-NAKCH 414
+GKT F + ++ I S + +I++PTREL+ QI KV L N
Sbjct: 64 SGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSV 123
Query: 415 ACIGG-TMSVKIFANWRLVFMLLWVTPGRVYDLI 513
+GG + + LL TPGR+ D++
Sbjct: 124 LLVGGREVEADMNTLEEEGANLLIGTPGRLSDMM 157
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +1
Query: 256 TGKTATFSISILQQIDTSI------RECXALILAPTRELAQQIQKVVIAL 387
+GKT F + ++ I S + +I++PTREL+ QI KV A+
Sbjct: 65 SGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAV 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,496,778
Number of Sequences: 28952
Number of extensions: 318015
Number of successful extensions: 1034
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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